Array 1 60321-59115 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRO01000002.1 Neisseria lactamica strain NCTC10616, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 60320 36 100.0 30 .................................... TCTAGCAGTTTGAAAGACAACTTGGGTTTG 60254 36 100.0 30 .................................... CGTTTGAGCGAGCCTTCTTTGGCGATGCCG 60188 36 100.0 30 .................................... AAAGACGGAGAAAGCCTGTCGGAACGCTTC 60122 36 100.0 30 .................................... TGTGTTTTGAGTGATATAATCCGCCATATC 60056 36 100.0 30 .................................... AGCTCTGGCTATAATTTCGTTACGACTGTA 59990 36 100.0 30 .................................... CAGGGAAAACGCGCGCTCTTGATATGGCGG 59924 36 100.0 30 .................................... TTACTTGTCGAACTTCATTGATGTTGCGTG 59858 36 100.0 30 .................................... AAAGACGGAGAAAGCCTGTCGGAACGCTTC 59792 36 100.0 30 .................................... TGTGTTTTGAGTGATATAATCCGCCATATC 59726 36 100.0 30 .................................... AGCTCTGGCTATAATTTCGTTACGACTGTA 59660 36 100.0 30 .................................... AGTGTCAGCAGCAGCTTGTTCCCCTGTACA 59594 36 100.0 30 .................................... GCAGGGGGAGGACGTCCAGAAAGATTTGTA 59528 36 100.0 30 .................................... CAGGGAAAACGCGCGCTCTTGATATGGCGG 59462 36 100.0 30 .................................... CGAACTTCATTGATGTTGCGTGCGATAACA 59396 36 100.0 30 .................................... CAGGGAAAACGCGCGCTCTTGATATGGCGG 59330 36 100.0 30 .................................... GCAGGGGGAGGACGTCCAGAAAGATTTGTA 59264 36 100.0 30 .................................... TAGGGAGTAACGAGCCTGATGAAGTAGGTG 59198 36 100.0 11 .................................... CCCGTCGAAGT Deletion [59152] 59151 36 86.1 0 .........................G....AA..AT | T [59121] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.3 29 ATTGTAGCACTGCGAAATGAGAAAGAATAAGGATTC # Left flank : CACCTTGGCTGCCATCGACAAAATGGTTTCGTCATTTCAAGCCGGTGTAACCGATAAAAACGCCAAACAACTGAAACTGCCTGAAATCCTACCATTGAAAGAATACCGATATGAGTGAGGCCAAATTTATGAGGATTATCGTCTTCTTCGACCTACCGGTTATCACGGCGGCAAAGCGCAAAGCCGCCAATCAATTCCGCCAGTTTTTATTAAAAGACGGATACCAAATGCTCCAGCTTTCCGTATACAGCCGTATCGTCAAAGGCCGAGATTCGTTGCAAAAACACCACAACAGGCTGTGTGCAAACCTGCCGCAAGAAGGCTCAATCCGCTGTTTGGAGATAACAGAAAAGCAATATGCCGCCATGAAACTGCTGTTGGGCGAACTGAAAACCCAAGAAAAAAAGGTCAATTCAGACCAACTATTATTATTTTAAGCCCATTTTTTCAGAACAAATAAAACGGGAAACCCTTATAGAATAAGGATTCCCCGTCGAAGT # Right flank : GCGCCCCTTATGGAGCGCAATATATAAGGCTTTATCTTCAAAGGCTTTCACGGTTGCATCCCTTATCCATCAGTTCTTTAACAAACAATATGCCGTATTCATACTCTTCGTTTTCGGTCTTTTGTTTCAAAGTCGGATTGCAGATATAAAAAGAAACTGTTGTGATGCATTGGGATTCGTAGACTTTATCCTTGAACACTTTCATGATGTATGCTTTGTGGAAATATACGTGTTCGGGATTGACATTATAGAAAATAAACATGATTAAGCCCCTTCACTGGCTAGAGTTAAGGGGCTTTACAAGGATTAAAAATATGCGCCCCTTATGGAGTGCAATATATAAGGATTAAAAATATGCGCCCCTTATGGAGCGCAATATATAAGGCTTTATCTTCAAAGGCTTTCACGGTTGCATCCCTTATCCATCAGTTCTTTAACAAACAATATGCCGTATTCATACTCTTCGTTTTCGGTCTTTTGTTTCAAAGTCGGATTGCAGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCACTGCGAAATGAGAAAGAATAAGGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 337182-339516 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRO01000002.1 Neisseria lactamica strain NCTC10616, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 337182 32 100.0 33 ................................ CTATCTTTCCATTCGTTATTTATTTTTTTCGCC 337247 32 100.0 34 ................................ AAAATATGTACGAATCTATGAAAAAGGCAAGCAT 337313 32 100.0 33 ................................ CATGCCGTCGGCTTTTGCGCTTTCCAAAGCGGT 337378 32 100.0 34 ................................ TAGATCAAAATATTAGAACGCTTGTACGGAAACA 337444 32 100.0 35 ................................ AATTTCTTTTTCATAATCATGGATATATTCGCAAG 337511 32 100.0 34 ................................ TTCGGTTTTTTGCCGTATCTATGACAAAGCAAAA 337577 32 100.0 34 ................................ TTACTCGTATGGGCATTTAAAACAGTAGGAAACC 337643 32 100.0 34 ................................ AAATGCTCCCCTGGGTACTGTTTTCCCTCTTAGA 337709 32 100.0 33 ................................ AAAAATACCCGAAAATGTCCAATGGCTGAATAA 337774 32 100.0 34 ................................ CCCTCTTTTTTGACGCCTAATATATCGATCCATC 337840 32 100.0 34 ................................ ACATTAAAATAACAATAATTAAAAATACATCCTA 337906 32 100.0 35 ................................ TATCCCGACGAAACCGCCCCTTTAGACAGCCTGAC 337973 32 100.0 33 ................................ AGCGGCAAACCGAAAGTTTCATACTCTTTCGCG 338038 32 100.0 33 ................................ AGATTATAGGGGGCATAAATTCAAGTCGGTTAA 338103 32 100.0 33 ................................ TTGACATATCGGATTTAAATTTAAAAGACCCTG 338168 32 100.0 33 ................................ GACGCATCCCGCGTCGTCCCCACCGCCGACGAA 338233 32 100.0 33 ................................ CAAGACTGGATATTTGAAGAGGTTATCCCTCAA 338298 32 100.0 34 ................................ TTCCCCGACATACTGGCTTGCGACAGGCTGCCCA 338364 32 100.0 34 ................................ TCCTTGTCGCGCCAAATCCGCCCCACGCCCTGAA 338430 32 100.0 34 ................................ TCAGAGTAGTGCAGGTCGAACATAGCACGCAATG 338496 32 100.0 34 ................................ ACAGCCGCGCCGTTACTTGTTTTCAGGACATGAA 338562 32 100.0 34 ................................ CTAAATATTGTTTAAAGATTTGTCTAAAATTATT 338628 32 100.0 33 ................................ CCCTTAATCAACTCGCTATCTACAAAATCATTG 338693 32 100.0 33 ................................ CTTCACTATTCCATTGGATGACACTCGGATTGC 338758 32 100.0 35 ................................ TTGTTTGGACTTGTCCGGAAACACTGCTTTCAATG 338825 32 100.0 34 ................................ TATCGTAAGTTCGGGAATGCCTTCGATAAAAATC 338891 32 100.0 35 ................................ CCATTTACTACCATCTTTTGCGGTGCCAATGCAAA 338958 32 100.0 34 ................................ GCCAACAAAGTCGCGTCAATGGTCGGAATATCGG 339024 32 100.0 35 ................................ CAAGAATTAAAAATTATGGTGCAAGAATGGTACAT 339091 32 100.0 34 ................................ AAAACCTGCGCCTGACATCATCGTGGGCATACGG 339157 32 100.0 33 ................................ GGTTTTGGCAATGTTGCCGCCGAGCCTGCCGAA 339222 32 100.0 34 ................................ CGAAATCCAATCTGTTGTTCTTTGTGGAAAAATG 339288 32 100.0 34 ................................ ATCATAAAACAAAATATTAGTGATGTATCCACCA 339354 32 100.0 34 ................................ AGACGGTATTTTTGACGGCAAATTGATTCGTCAG 339420 32 100.0 33 ................................ AAGGCAGAAATTGATTTTGATTTCGTCACCAAC 339485 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 36 32 100.0 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : CGGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAACAGGTTGATATTATCTGCACATATTAATATAATGATAATTATTATTAATCAAACAGGGAAAAAGTAGGGATGTGTAAACTGAATTATGGCGGCATTGCCTTGCTGCCGTTGATGCTGGCAGCCTGCGGCGGTAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCACCCCCTGCCGAGCCTTCGGTAGAAACCACACCGGTCAACCGGCCCGCCGTCGGCGCGGCAATGCGGCTGTCGAGACGGAATATCGCAACTTTTGATAAAAATGGTAATGAAATTCCCGGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //