Array 1 58970-59178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGP010000016.1 Pectobacterium versatile strain A165-S18-M16 A165_(paired)_trimmed_(paired)_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58970 28 92.9 32 A..T........................ TGGCGTCACGTCAGCACATGCCGAAACCTCAC 59030 28 100.0 33 ............................ ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 59091 28 92.9 32 ...........CA............... TGAGAGATCAGCACTCCGTCGTCATCGTTGCA 59151 28 85.7 0 ............AC......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.9 33 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AACCGACGGACGTCGGCGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGATCTCATCTACTGGTCTTGCGCTGCATCGGGTTTCTGCTTTCTGGCGCTCTTTCGGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGGATTCAATATTGGCAGGAGTATGAAAACGACAATGTGATACTCTCCCCGATGCTCGGTGAACTGTATGTTTCCATGCTGGTAGGCGCAGGCATGGCCGCCATCGGCATCGTGAAATATCGACACGATCGGCGCAACCCAGTCGCTCAACGCCCAACCTATGCGAAAGCGGTCGCTGCATTGCTGCTCGTTGCGCTTTATTTCGCGCTCCCGCTGCATCTCTACCTGCGTGAACCTCTCCCCTACTGCGCCTTTAGCCCTGACGGTCAGCAGTTAAGTATCTGTCTGGGAGACAATGACGAGCGGATTATTGTGGAGTGATGG # Right flank : AATTAAACGCAGCAAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAACTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACACTGCTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGCCTTGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 65370-65822 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGP010000016.1 Pectobacterium versatile strain A165-S18-M16 A165_(paired)_trimmed_(paired)_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 65370 27 89.3 33 T.........-T................ CTGCTTAGCTAAATGAGCCAGCTCGTCGTCGTT TA,G,C [65373,65376,65387] 65434 28 100.0 33 ............................ GGGCAAGATGTGTGGCTCATGACGCGATTGAAC 65495 28 100.0 32 ............................ AATTTGCGAAGCGGGCCATTTGTAGAAAAGTC 65555 28 92.9 32 A..........T................ ATCCACCGTTACACCCGCGAGGAACTGGAAGC 65615 28 96.4 32 ...........T................ TATTCCTGTTTGTTTATAGTGATTACACTCTT 65675 28 96.4 32 ....................T....... GGTTACGCTATCCGGCGTAGCTTCACTGCTCC 65735 28 89.3 33 .......A...TG............... GAGTAGTTCAGATAAACACATGTAAATCATGGT 65796 27 78.6 0 ...A.......TTC.......-....T. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 92.9 33 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCTTTTTAAAATCAAGATGATCTTCTAACCGATAGTCATCATCCACAAGCGTTTTTAAAACGGGATCGTATTTCACAGTCACTCACTCCCTTGAATTTGACTTAAGTCAACGTGCTATTTCCCTGTAATGACACTTTAACGGAAAAATGATGATTTTTAAATGTGAATAACGCTCAATGCACAATTTTTCATTCCCTAAAAAAGAAATTTATTACTTAAAAACGTTACGAAAGAAGGCCATCAATATGCGTTATTTAAGGGGATGAGCGCTGGCGTAGTACTACCTCGATAATAGCCAGACAACAGCGCTTAAGGTCGTGGATAAACTGCCTGTGCGGCAGTGAACCCGTTCAATTTCGTTGGCTTCGCCCTGTAGCTTTTCTAAGCTGCCTATCCGGCAGTGAACGGCTGGCGTCCCACGCAGATGTGCCAGCGTCGTTTCTAAGCTGCCTATACGGCAGTGAACATTCAGGCGTAAAAAAACCGCTCGTGGCGGCT # Right flank : ACTTATCGGGATGCGTCGCTGGCGCGACACATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGACTGCCGCCGTGGTTGCGGTGTTCGCACAGATAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCCAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTCAGCGCTGCCGAGGTGTGCTTGATGAATACCTGCATCAACCCGACTTTTATCTGACGCAGTGCGGTGACCTGTGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGG # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : TTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //