Array 1 8761-7268 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDHU01000109.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8760 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8699 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8638 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8577 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8516 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8455 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8394 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8333 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8272 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8211 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8150 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 8089 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 8028 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7967 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 7906 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7845 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7783 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7722 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7661 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7600 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7539 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7478 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7417 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7356 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7295 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65354-63511 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDHU01000033.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65353 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 65292 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 65231 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 65170 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 65109 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 65048 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 64987 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 64925 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64864 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 64803 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64742 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64681 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64620 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64559 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64498 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64437 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64376 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64315 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64254 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64193 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64131 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64028 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63967 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63906 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63845 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63784 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63723 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63662 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63601 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63540 29 96.6 0 A............................ | A [63513] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //