Array 1 6187-5357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYN010000002.1 Listeria monocytogenes strain UTK_C1-0013-E1 NODE_2_length_462765_cov_90.491651, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6186 36 100.0 30 .................................... TACATTGTAGCATATAAGTTTCAAACTGTC 6120 36 100.0 30 .................................... AAATAGCATACATACATGCAGAAAAACGGG 6054 36 100.0 30 .................................... AAATAAAATTAAAAGGGGGTGTGTTAATTG 5988 36 100.0 30 .................................... TTCTTGCTAGCACTTGAATAATATCAACGA 5922 36 100.0 30 .................................... TATTCACGTTAATAATGATGGCAACGAGTA 5856 36 100.0 31 .................................... CGCCGCGTTCGGAGTAATAATTGCAGTCATT 5789 36 100.0 30 .................................... TCGGCTGTTGATTGTTGTAAATATGGGTCT 5723 36 100.0 30 .................................... GTTTGGCAGATTTAATAATTGAAAATATGC 5657 36 100.0 30 .................................... GCTTCTCCCGCTGATTCATCTGGTAAAACT 5591 36 100.0 30 .................................... ATTACCTTTGGATTACAACGCATTGCGTGT 5525 36 100.0 30 .................................... AAGACGTAAAAAACATGTTGCGAGACAATG 5459 36 100.0 28 .................................... TAATATTCTCCCCCCATCGCTAACAGGG 5395 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5360,5363,5368] ========== ====== ====== ====== ==================================== =============================== ================== 13 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAAAAAGGGTGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATTCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTCGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATCTTATATGATTATATTCTAAATGCGAGTAAAAATAGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACACTATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 103090-100849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYN010000004.1 Listeria monocytogenes strain UTK_C1-0013-E1 NODE_4_length_229164_cov_80.066145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 103089 29 100.0 35 ............................. TGTATACGTCACTATTTTTTTGAAGTAGTTGCATT 103025 29 100.0 37 ............................. ACTATTTTTACGTCATAGCAGATATCTAGCGGTTCAT 102959 29 100.0 35 ............................. GCCGGATATGTGCCACCAGTTTTGTTTTTTGTTGT 102895 29 100.0 35 ............................. GGCGTTTTATCGTGCCAAATATAATAAGCTTTTCG 102831 29 100.0 33 ............................. TTGACGCTCGAAACAGGTTACTGGTTTGTGTTT 102769 29 100.0 35 ............................. CCCTCTGCAAATACGTGTTTGACATCTGCAATATC 102705 29 100.0 36 ............................. AGAAATAATTTTAAAAAGTGAGTTGAAGTAAAAATA 102640 29 100.0 37 ............................. ACATTTCCAGCGGCATTCAATGAATACCAAGTATCGC 102574 29 100.0 35 ............................. ATTTTAGATGCTAACTGATTTTGTGTAAGATTTTC 102510 29 100.0 37 ............................. ATAGTCAATTTTGCTATTTACCACGCAAGTATGAGAG 102444 29 100.0 36 ............................. ATTTCTAGCAAGTTTTTCTTGTTTTCTATCATTAAC 102379 29 100.0 35 ............................. ACAACAAGCGGAACAAGTGACAGTGAGTTAGTACT 102315 29 100.0 39 ............................. ATCCTGGCAATATGCACGCTTGTGGGCACGATTTACATA 102247 29 100.0 36 ............................. CTGGTATTAACACTGTAAAAGCAGTTCGCTGCGAAA 102182 29 100.0 35 ............................. AAAAGACATCTTAGAATATTACACACGTGTTCTTA 102118 29 100.0 36 ............................. AATTTCGGAAGATATGGCTAATTATTGGCAAAAAAT 102053 29 100.0 35 ............................. TCGAAACGCGTATTACAGCTATTGATGGTACTCGT 101989 29 100.0 38 ............................. GTTCTTTACGCTCTTTATCAGCGTTTAATTGAGCTGAA 101922 29 100.0 36 ............................. GGAAATTCACTAAACTGGTCTTTTGATAGTAAAAAT 101857 29 100.0 36 ............................. TCACTTGAATAAACTTCACCATTCATCCCTCTTTTG 101792 29 100.0 34 ............................. CTATGTCATCCATTGTGAGCGTTTTTGTATATGG 101729 29 100.0 36 ............................. TTGGTTTCATTCACATAGCTTAAAGTTTTGCTAAAG 101664 29 100.0 37 ............................. AAGACATCTTAGATATTATCAAAACTGCTGGCATTGG 101598 29 100.0 43 ............................. GTAAATGCGGTAAAGGATACGTTTCTTTTAATTGAAAACTAGT 101526 29 96.6 36 .......................T..... CATTGCAAACTGGATGGTATTATATGCGACGGCGCT 101461 29 100.0 37 ............................. AGAACTGTAATAAGTGTTGCTACAACAGTTCGCCAGT 101395 29 100.0 35 ............................. AGCGCGGAGTGGGAACTCAAATTAATATCTTCTCC 101331 29 100.0 36 ............................. AAAAGAAGCTCTGTTACATCGTCTTTTTGGTCAATT 101266 29 100.0 35 ............................. TTAGGTCTTCCATTGCCATGTTTTCAACAAAAACA 101202 29 100.0 35 ............................. TCTTTACTTACCCCTTGCATTAGTTCTCCGCCCAA 101138 29 100.0 35 ............................. ACCCTTTGCAATAACTCTTTAGGCACTTTATCTGT 101074 29 100.0 37 ............................. TAATACAAAATATTCATAACTCCTACATCATTATATA 101008 29 100.0 35 ............................. CCGAATTTCAGTAATGAATTTCATTCAAAAGTAGA 100944 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 100878 29 93.1 0 .......................C....C | A [100853] ========== ====== ====== ====== ============================= =========================================== ================== 35 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGGTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTATACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCCCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAACGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCTACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 118520-118159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYN010000004.1 Listeria monocytogenes strain UTK_C1-0013-E1 NODE_4_length_229164_cov_80.066145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 118519 29 100.0 39 ............................. TTGAAAGACCAGCGTATATGCCAGCCATACGGTTTTCCT 118451 29 100.0 37 ............................. CGCTATTTATTCCTTGAAAACGTTAAAGGGTTACTAT 118385 29 100.0 37 ............................. GAGCTTGCAGAATTTAGCAATTGGGCTACGAAAAATC 118319 29 96.6 37 ................G............ TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 118253 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [118229] 118187 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 92.0 37 GTTTTAGTTACTTATTTTGAAATGTAAAT # Left flank : GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGGCAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATCACAATAAGAGCAGATTACAAAATTCCAAAAGATATTAGAGAACTTGAGGATAATAGTGCTAATATTGTTAAAGTGAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTTTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTTTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //