Array 1 1755109-1756146 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP017529.1 Mannheimia haemolytica strain 1560 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
   1755109	    32	  93.8	    36	C....................C..........	CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 	
   1755177	    32	  93.8	    34	C....................C..........	TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGG   	
   1755243	    32	  93.8	    35	C....................C..........	CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAA  	
   1755310	    32	  93.8	    36	C....................C..........	CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 	
   1755378	    32	  93.8	    35	C....................C..........	GTGGCACAGTAACACGAGCAGATGCTGATAAACGC  	
   1755445	    32	  93.8	    34	C....................C..........	CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG   	
   1755511	    32	  93.8	    36	C....................C..........	TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 	
   1755579	    32	  96.9	    34	C...............................	TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG   	
   1755645	    32	 100.0	    35	................................	TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA  	
   1755712	    32	 100.0	    34	................................	TTTACCGTTTACCGATTGGATTTTAATGCTAGAG   	
   1755778	    32	 100.0	    35	................................	CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC  	
   1755845	    32	 100.0	    35	................................	CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC  	
   1755912	    32	 100.0	    37	................................	AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA	
   1755981	    32	 100.0	    35	................................	TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT  	
   1756048	    32	 100.0	    35	................................	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG  	
   1756115	    32	  93.8	     0	..........T............T........	|                                    	
==========	======	======	======	================================	=====================================	==================
        16	    32	  96.7	    35	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                     	       

# Left flank :   TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA
# Right flank :  CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA

# Questionable array : NO	 Score: 8.79
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   CAGCCACCTACGCGTGGCTGCGAATTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [8,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-1.10,-1.30] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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