Array 1 281663-282470 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MKNC01000001.1 Listeria monocytogenes strain NRRL B-33191 PROKKA_contig000001, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    281663	    29	  93.1	    36	..........T...T..............	TCTGATACTTTACCTTTGTCCTCTAATGATTGTATT 	
    281728	    29	  96.6	    36	..............T..............	TTACCCGTTTCATCATTTCCAAGCGTTGCATCAATG 	
    281793	    29	 100.0	    37	.............................	TCTGTATAATAAGAAGTACGTTTTGCGACTGGTGCCA	
    281859	    29	  93.1	    36	..............T...A..........	AAAACAACTAAAAGACCGCCTACTATTTATACTCCT 	
    281924	    29	  93.1	    35	..............T...A..........	TCTTTTAACCTAGCTCTTATCAATGTTTGAGTAAC  	
    281988	    29	  93.1	    36	A..............C.............	GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 	
    282053	    29	  93.1	    35	..........A...T..............	ATTTACGCAAGAACTGGAACTATTAAAGCCGCTAT  	
    282117	    29	  93.1	    36	.........G....T..............	AAAGGTAATACGAATTTATCTGTTAGTTGAAAAATC 	
    282182	    29	 100.0	    36	.............................	TCGACATAACACATATATTTAAAATCATTAAAACTA 	
    282247	    29	  93.1	    36	..........A...T..............	AATTGTTTGGCTAAAGCGTCAGAATAAGATGTTGTG 	
    282312	    29	  96.6	    36	..............T..............	AAGGCAGTTAAGTAAGCAGCGACAGGGAACGGAAAT 	
    282377	    29	 100.0	    36	.............................	GGAATCACGGACAGTCAGGCGAAGATAACTAAACTG 	
    282442	    29	  75.9	     0	T.....A.......TCA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        13	    29	  93.9	    36	GTTTTAGTTACTTAATGTGAAATGTAAAT	                                     	       

# Left flank :   GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCATAGAAGTTATCGCTTGCGCAACCCACTCTGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGTTGGAGGAAGGGAAGTTTGACGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  TCTCCTCCATACACAACTCCACCACCATCCATCAAAATCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC

# Questionable array : NO	 Score: 5.33
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTAATGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [3-12] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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