Array 1 205909-204232 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGF01000001.1 Salmonella enterica subsp. enterica serovar Gaminara strain 05-0781 NODE_1_length_680243_cov_5.0957, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 205908 29 96.6 32 ............................T TACGGGTGGCATACGACAGCACAGCGCGTACC 205847 29 100.0 32 ............................. CCCGTCCACTGCTGGATGAAATGATGGAATGT 205786 29 100.0 32 ............................. GGCACGACGCACCTGCTAAAAAATACTACCGC 205725 29 100.0 32 ............................. CGTATTTTTGAACTGGCCAGCGCCACCGATGC 205664 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 205603 29 100.0 32 ............................. CGCCAGCGCTGAGGTGAATTTTAACGGTGTCA 205542 29 100.0 32 ............................. AAACAACTCTGTCTATTTTATGAATAGTTAAA 205481 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 205420 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 205359 29 100.0 32 ............................. GTACGTTGCCAGATTGCTTTCAATGATGGCGT 205298 29 100.0 32 ............................. TACTGACACCTCAACCTTTTATTTATAAGCCA 205237 29 100.0 32 ............................. GCCGGGGTTTCCCGGAGGCATTCTGATGAAAG 205176 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGA 205115 29 100.0 32 ............................. AAAACCCAGGAACGGCACCAAAATTTACACAT 205054 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 204993 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 204932 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 204871 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 204810 29 100.0 32 ............................. GAGCATACGGAAATTAAAGGGGTTAACGATCA 204749 29 100.0 32 ............................. CGCGCAACATTCATTACTGCCCACTATTCAGA 204688 29 100.0 32 ............................. AACGCGCCGCCTTAGAAAAACAGCGAGGGGAT 204627 29 100.0 32 ............................. CGTCCTGTACGTGGTAGCGATAATCGTAATAA 204566 29 100.0 32 ............................. ACGCTGAAAAACGATATTTCGCTGACCTATGC 204505 29 100.0 32 ............................. GCTGATACGCAGACGATCACAAACTATATGGG 204444 29 93.1 32 ...........................TT TAATCATTTTGTTTAAATCCCGGATCACCTCC 204383 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 204322 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 204261 29 96.6 0 ............T................ | A [204234] ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTATTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 223917-222669 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGF01000001.1 Salmonella enterica subsp. enterica serovar Gaminara strain 05-0781 NODE_1_length_680243_cov_5.0957, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 223916 29 100.0 32 ............................. CCCGGTTTTACCGCCAACACTCACTATATTGT 223855 29 100.0 32 ............................. CAATCATCTGATTTTTTATCATTGAGAGATAT 223794 29 100.0 32 ............................. GCAACTTCTTATATGTAAAAAACCGTTATGAT 223733 29 100.0 32 ............................. TCCGGGGAAAGAACTCGCCTCGTCCAGCGTCA 223672 29 100.0 32 ............................. GCAATATGAATAACAACGTACCACTCATCGCA 223611 29 100.0 32 ............................. GAGCACTTTTACTGTAGGACTTGTATGAATCT 223550 29 100.0 32 ............................. CGGCCGTAGCGCCGCTCAGTCCGGGGGATGGT 223489 29 96.6 32 ...........A................. CAATTGCGTTCTTGCTTATGCCCAGCGACTTA 223428 29 93.1 32 ..G.........T................ ATTTCAAACACTCCGGGTCTGCCAGCGCCTCA 223367 29 96.6 32 ..G.......................... CGGCGGCGGACGCCGCTCAGATAGCCAAAACC 223306 29 96.6 32 ..G.......................... TATACAGGATTCTCACACTTTGGTTTGGTCGA 223245 29 96.6 32 ..G.......................... CGTTTTTTTTATTTGTACTATTGTCAGTACCC 223184 29 96.6 32 ..G.......................... CGGAAACAAACAAAGTTTTGCGCGATTCCACC 223123 29 96.6 32 ..G.......................... CACCAGGTAACAATATCGTCCCCGACCTTTAT 223062 29 96.6 32 ..G.......................... GCGAAATTCCCCAGATACCGCGCATCGGCACT 223001 29 93.1 32 ..G.........T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 222940 29 93.1 32 ..G.........T................ CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 222879 29 93.1 32 ..G.........T................ TTGCCACAACCACAATGGATCAGGAGCAATTA 222818 29 93.1 32 ..G.........T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 222757 29 93.1 32 ..G..........T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 222696 28 86.2 0 ..G.........T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 96.2 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATTATAGTCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAAGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //