Array 1 13385-13749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMJ010000005.1 Virgibacillus sp. 19R1-5 NODE_20_length_22798_cov_32.489700, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 13385 32 100.0 36 ................................ TAGAACCATGAATTACTAGGATTATCCTGCTTTGCC 13453 32 96.9 35 ..................T............. TTATTTGGATCTTTTGCCGTTGTCCACAACAACCC 13520 32 100.0 33 ................................ CCTAATGTGGTGTAGGCTAACCCTCCTTACCAC 13585 32 100.0 34 ................................ TCGTGTTCCAATATAAAGGATTTCTGTTGTCGTC 13651 32 100.0 35 ................................ TACGGGAGTAGATGAGTTTACCTATGCCCCATTAG 13718 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 99.5 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : CGAACAAGGAAAAAACGAACCATCTATTGAAACTATCAGAACACTAGCAAAGCTGTTCGACGTCTCCACAGATTATTTACTAGGTCTGATTGATCAACCCAAACACCCCATAAATTTTACTATAAAAGATGATTTCACATTAACGGAGTCAGAATTGCAAACCGTCAAACAAATGAAAGAGCAACAACTACTAAGTGAATTAAGTGAGAATCCTGTTGAAAATGTGGAAAAACTGACGAAGCTTTGGAAATTTATTAATGAGTTGTAGGGATCGGTGCGAGGTTACAGAGTTTAAAACTAACTATTTGGTTAAAATTATTTGATTGTTTTGGTGCGAACCTGAAGTGCACATAAAAACACAGGGGGATTCGCACCATTATTTCATTGTTTTTTGTTAATATTTGGAATAAAATATATGGTATTAACATTGGTTTATAATATTTTTCTTTTTAATGGGTCATTTTTTAATGTTTTTTGTAAACTTTTAGGAAAAAATCGCT # Right flank : TGCGTCAACATTAATTTCACTCATATCGTTAACAATAATGGCTATTTTTAACCCTTTCTGATTTTCAAGAAGATGATTGAGCAGAGATGTTTTACCTGCTCCCAAAAAACCACTTAAAACGGTTACTGGTATTTTTTTACTCATTGATCTTCCCTCCTCTATCATGATCCATATATGCCCGACTAGGTGTAGCGCCTTCTTGAAATAAATACTTTCCACTATACCCTTCTGTAGCTTGATCAACTTGCACTATTACCAGTTGGCAAACTCGCATACCAACCTTCAATTGAACAGGGACTCGATTTGCATTAAATAATTCCAAAGTGATCTGCCCAGAGAAGCCCGGATCGATCCATCCAGTATTTTGAATAAAGACACCAAATCTGCCGATAGAACTTCTCCCTTCAACAAAGGCTGTTAAATCGTTTGGTAAACGAATTTGCTCTAATGTTGTTCCTAACATAAACGTGTTAGGCGGAATCGTGACGACTTTCTCATCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 609494-608997 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMJ010000016.1 Virgibacillus sp. 19R1-5 NODE_1_length_628707_cov_35.358413, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 609493 32 100.0 34 ................................ ATAGTTAATTCTTTCCAATTGACTTTCCCCTTTT 609427 32 100.0 35 ................................ TGTCCCAAACCCTTCTTGTGATGTAGCTATTTCAA 609360 32 100.0 33 ................................ CATACCGCTTGTACTTCCTGCTCTGTGTACTCG 609295 32 100.0 36 ................................ TGGGCTGAAATGATGACTGATATTAAATATATACAA 609227 32 100.0 34 ................................ TATTTCTTCTCGATACAATTTATAATTTTCCTTG 609161 32 100.0 34 ................................ CCACTTTTCGTTGGTTATCACGCCTTTACTAAGC 609095 32 100.0 35 ................................ CACATCCTGAAGCAAAACCTACACCCTAATAAGCC 609028 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : CTGGTTCATTGCTAGTATCCTCCTATAAATATCTTCTTTTTCTAACAACTTCAGTTTACACGGTATTAATCGACAAATTAATACCGCTTTTTTCATTCCATGATGAAAATAACCGTATTAATTCACTGTTTTATTTTAGGTTATATAATGTTGCTTGGAAGAAATCATTTGCTGTAAAAGCTAAATGTTTTACCATTGAATGAAAATTAAATCGTTTTCAAATATATCACCGAGGTCTTAATAAAATTCTATTACACCTTAAATGACTAATTATGAATTATGCCTTATAATGAATACAGAATTATTAATGCCATTTCAGTTGATTTTTTTGGTGCGAACCCCAAGCGCACATAAAAACCCCGGGGGATTCGCACCAAAATTCACTTGTTTTTGTGGTAATATATGTAATATAATTCAACACAATTAGCATTATTTACGATTTCCAAGCTAAAAATATGCTGTTTTTTGATTGTTTTTGTTATTTTTAGGAAGAAATCGCA # Right flank : ATAACGGCGACCGGAATAACCTAACTCGTTTAAACGTCGCACCTTATATAGATACAACAAGCTCAGAAAAAATGAAATCGCTCGCACACACCCTATTGCTACCAAATCTCTAAAAGACATGAACCAAATAACCTAACGGAGGCGCGTATGTTTATTTATATCCTTATATCTTTAAGTATCATTATCCTAACCGTCATAATTAGCGTTCTTTGGCTAATTTCATGGTCAAAAAAGCCTGATGCAGATTACGTTTTAAAATTTATAGCTAAAAATCCGCAAAGATCTTCCTTAATAATTATAAAGAACGGAAAATCGCTCGCAAACGTTAACGCGAATGAACGAAAACCATTAGCTAGCACGGTAAAAATCATGATTGCCATTGAATTTTCCCAACAAGCGGCTAATGGTAGCATAAACCCAGACGAAAAAGTTCATCTTGATGATCTCGCTCGTTTTTACGTATCTCACACTGATGGAGGCGCGCATGAAAAATGGTTAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 617485-616983 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMJ010000016.1 Virgibacillus sp. 19R1-5 NODE_1_length_628707_cov_35.358413, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 617484 32 100.0 36 ................................ TATTTGTTTTTTGATTTGGCTTCGTGTATGACTTAA 617416 32 100.0 33 ................................ ACCTCACCATATTTGTAAAAAACATTGTCTATC 617351 32 100.0 33 ................................ ACCTCACCATATTTGTAAAAAACATTGTCTATC 617286 32 100.0 35 ................................ ACTACCATCCATTACCGCCGTATTCATATTCAGCA 617219 32 100.0 38 ................................ TCAGTATTTAGTTATCTATAAGGAGGAAACGGAATGAC 617149 32 100.0 33 ................................ CTTGTTAAAGTTATCAAGTGTTATTTTATCGCC 617084 32 100.0 34 ................................ TCCGGCAAATCCCGTATAAGTCAGAGAGTGTTTT TATT [617073] 617014 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 8 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TTATTTATGTGTAAAGGCACCTCAATCCCTCCCACTAGTCATCATTATATCTCAGTTAAAAAGGCTTAGACAGACATACTTTTTCCATTATAAAGTGGAAGAGTGTTATTGAAAGATGATGCTTAAACCGTTGTTTGCTAACTTAATTATCACGTTTTTATTTAGATTTTCTCCAATGTTTAGCGCTCATTGACAATTGAATCTAACTTCATTGCAACTAGTTTGGACAAATAATAATTTTATTCCTTTTGTTGATTTCATCATAGTTAAGTGATCTTTATTTTAAACTATCGTATAATAGAGATACAAAATTAACATGAGCTTATTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTCAACTATTTTTATGGGAATTTATGGAGTTAAAACAACGACTATTTAAGCATTATTATTGATTTTCTCTTTAAAACAACCACTTTTATACGACTTTTGTAAATTTTTAGGGAGAAATCGCT # Right flank : TCATCAATATCGGTTGCTTGTACAGTTATCTTTTTGTTGGATAGGTTACACTTGACTAGACAAAAAAATTAAGGTGAAGTAGACTAGACGGAATATAATAATGGTTCATGATAAAAAAGGAAATTAATCATACAAAGTGTCTTTACCCGGAGAAGCAGGCATGGTACCCTGCTTCAAATACTATTTCTTCTATTTAACATCCAAACTTTTTAACTCACCACATAGTATGGACAAAAAGGATAAGGCTAGAAGCGGATATCGTCTAAAGACGGAGGAATTAGACCACTCGTTTGTAAGTTAAATCAATCAATTTTTAGTTCACATTACATCACAATCTATATCGTAATTATTATAAACATTAATTTAAAATGGTTAACAGCAAGTAAATTCTTGATCTTTTTATTAATCATAATCATGTAATATTGACCGTTAACCCCGCTTTTGCACGCTTCAATCATTTTGCTATAGTTCACGCAATATAGCCGTTTTCCATAGCAAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 623693-623257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMJ010000016.1 Virgibacillus sp. 19R1-5 NODE_1_length_628707_cov_35.358413, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 623692 32 100.0 35 ................................ TACACAAGCTTTATCTTGCAAAACAATAGAACCAT 623625 32 100.0 39 ................................ TCTCTTTACCCTTATGGCAATATTCACTTTCTATTTCAA 623554 32 100.0 35 ................................ CATCAATGCCATAATGCTGTAATTTGCTAAATCTA 623487 32 100.0 35 ................................ CTTCAAGGTAAATAAACACATCCTCCGCCACCAGA 623420 32 100.0 33 ................................ TTAAACGCGCAGACTTAACATTAGAAGATTACG 623355 32 100.0 35 ................................ TATCCATTTGCATTACCTCGGCGACTTGACTTGTC 623288 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 7 32 100.0 36 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : ATACAATTATATTGAAAATAAAGGATACACCATTGACAAGAGGTACGGTGAATTAATACCAATTCTTCCTAATGAAGAGCTAAAAAAAATCCTGCAATTGCAGGATAATCAACCATTGCTATTTTTAAAAGCCTTTACAGTGTTTGAAGATGGGAAGCCCTTTGAGTATTCTAAAGTATATTACCACCCGAAAAAATACTCCTTTAAATTCATCTCAGAAAAGAACCATTAACTAGGTAGTGATTCTTTTGTTGATTTTATCATAGTTAAGTGATCTTTATTTTAAACTGTCGTATAATAGAGGTGCATAATTAAAATTAGCTTATTTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTTAACCACTTTATGGGAATTTATGGAATTAAAATAACGATTATTTAAGCATTATTATTGATTTTCTCTTTAAAATAAGCATTTTTATACGACTTTTGTAAATTTTTAGGAAGAAATCGCA # Right flank : TTTAGCAGCAGAGTTTCGAAGGCTAAGTATAGGTGTGTGATTGGAAGAAAAAGAATCAACTGCTTTATCAAATAGTGGTAACACGGAAGTAATCTAACCATGCCAATAAAGTGAATCTTCAATCAGTGGAGGTTTACATTCGTTCCCCCACTGATTGTTAGTATGGTATGACCTAAAGGCCTCTGCATAAATCGAGTATTAGGTGCTGCTGTTATCTCCCACAGATTATCCAACTCCTGAAGTGGGAGACTTAAAGCACCTTATGTACAGGATAAAAACAGAACTCTGTAAAACACTCAAAACATTAAGCGTTTAACATGTGATTCACCGAAAACTTTAATTTTTCTAACCCATCATATAATTTCTCTTTTGGACAACCTATATTCATTCTTAGAAATTTTTCAGTTTCTCCGTATACTTCACCAGACATAATACCTACCTTCCCTACATGAACCAAATAATCTTGAATCTTCTTATTACTTGCGTTTAGTTTGCTAGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 343050-342819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMJ010000027.1 Virgibacillus sp. 19R1-5 NODE_5_length_417979_cov_37.149539, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 343049 32 100.0 35 ................................ TATCCTAATGTTGTAATTTACTTTTTTCATTTCTG 342982 32 100.0 34 ................................ AATATGAAAGAAGCACCGATACTATCCTTCGGTG 342916 32 100.0 34 ................................ ACTGGTATCAATACAACACGAACTATCGAGTCAG 342850 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TAGATGAGTATCCACCATTTTTATGGAAGTAGGCGAAAAAAATGTTAGTACTAGTTACATATGATGTCAACACATCAAGTAATGGTGGCCGAAAGCGGTTACGTAAAGTGTCGAAAGTATGTCAAAATTATGGGCAGAGAGTGCAGAATTCAGTTTTTGAATGTATTGTAGACGATGCACAGTTCGCTGCTTTAAAAATTCAGCTAACAGGATTAATAGATGAGGAAAAGGATAGCTTACGCTTTTACCGATTAGGAAATAACTACAAAACAAAAGTAGAACATATTGGTACAAAGGAAGCAATTAACTTAGAGGATCCCTTAATTTTTTAGTGCGAACCCCAAGTGCACATGAATTTCCCGGGGGATTCGCACCTTTTAAATGGAATAATATAGGTGGTTTTTTAGGAGGGCTTGCTAATTCAAATTTAAAATGACTTTATTTTTGCCCATAGATTTCACAAAAATCCATAAAATAGGAGTTTATGAGCAAAAATCGCA # Right flank : TTCAGATTTTGTAACCATAAATCAGGCTAGGAGAATGGTTAGCCTGATTTACATTTGATATTTTTTCTAATGCCTTTATATTTTCTGATTGGCATACTTCCAACCCCTAGGAATAAGGCCATTTTTCTTTTAGCATGTCCATAAATATTGCTACATTTTGTTTACTTTTCATAATAGGTGAGTAAACGCAGGAAAACATTCGTTTGAAATGGATGTCCTTGAGCTGTAATGTGGTGAGCTGCTCTAATTGCACATCTCGTTCTATAACACTATGAGACAATAATGACAGTCCCATTCCCTTAATCACGCTTTCTTTTACTCCCTGATTGCTACTGATCGTGAGAAATGATTTAACTTGTAATCCGTTGGAACGAATCACATGCTCTAAATATTCTCGGGTCCCAGACCCCTCCTCACGGGAAATCCATGATTGATTTTGCAAATCTGAAGTGGTTATCTCTTCTTTTTGAGATAGTTCATGGGAAACAGGTGCAACTACC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 352131-352361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMJ010000027.1 Virgibacillus sp. 19R1-5 NODE_5_length_417979_cov_37.149539, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 352131 32 100.0 33 ................................ ACCCCTAAAAAATAATGATTGAAACTCTACATC 352196 32 100.0 33 ................................ ATGTAAAATCCTCCTAATTTTAATTTTTTAAAG 352261 32 100.0 36 ................................ ATTTGAATGAATGGGGAACGGTTAAAAACCCGAACC 352329 32 78.1 0 ............A......TT...C.CT...G | G [352351] ========== ====== ====== ====== ================================ ==================================== ================== 4 32 94.5 34 GTCGCACCTTATGTAGGTGCGTGGATTGAAAT # Left flank : CACATAAATGCTTTATACCTATTGGCTCGCCGTACTGCTCCGCCAATTCCCTCACCTCTAACAGGTGATCTTTTACTGTTTGTACTTCGCTGTCACTTTGTCGAATATGCGCAATAAAATCCAAGTAATCACAGCCCATCATTAATATTTTATTCGCGTTAGATAGGAAAATAATGTCATACTGTTCTTAGGTAAATTGTATCATAAACTATTTCTGTTTTCTATGTAAGAATAAGTATATATCACTAATTTTTTGGCTCGAATACTATAAAATTATTGAAATCCTTCTAAACTGTAATACAATAATCATTAGAAGGACTTATTACATTTTAGTGCGAACCCCAAGTGCACATGAATTTCCCGGGGGTTTCGCACCATTTAAATGGAATAATATAGGTGATTTTTTAGGAAGTTTGCTAATTCAAATTTAAAATGACTTTATTTTTGCCCATAGATATCAAAAAAATCCATAAAATAGGATTTTATGAGCAAAAATCGCT # Right flank : GATGATTTCCACCTTTTACCAAAGAAGATGGATTCAGATCTGAGAAAAATATCCATCCTCTTGAATTACTCTCTAGCCATTTCTGATGCTTGAAAAATGCCTCATTCATTTTTGGATTCACCCAAAACACACTTTCCCTTCTGTCCACCCTTTAGATTCGTAACAATATTTTTTATCATTTAACTCATCAATTAGGCTAATGATCAAGTTAATATTTAAAATAATACCTTATTTTAAAGCTTTGGTTTTACAATTCACCATTGAAGCAATTTTTAATTAGTTGTTACATGTAAGCAGGCGCTTGACGAGTGATTAATGAAAGGACAAAACAAATTAATATGGTATAGAAAGACTTATAAGGAAAACAAAAACCTTAAGTATTACCTTCACATAACATAGATACTAATAATAAATTCGAAACTAAATCCCTCTTTAAAACGTACAACGTACTACATAGATAGGAACAAATTCCAAACAAATCCATGTTTTCCATAACGATG # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10525-10688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMJ010000020.1 Virgibacillus sp. 19R1-5 NODE_16_length_74358_cov_33.315744, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 10525 32 100.0 34 ................................ CTCATCCTGTGGTGCGTTTGCCTTTAACTCATTA 10591 32 100.0 34 ................................ GTGTATTATTTTATTTTTATCGTCTATCTCAACA 10657 32 90.6 0 .......................A..A....C | ========== ====== ====== ====== ================================ ================================== ================== 3 32 96.9 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : GATTTATGATTTTAATTCCTTACTTTATCTACTTTGAACTTAATCATTTATTTTTTCGATAAATATAGCAGTTTTTGCTTAAATTTGTCGTTTATACTATGCTGTAGTAATTTAATTTTACTTTCAATTTACAGATCACCCTGTGAATGAAATTGAAACACCAATTATGCATTTTGCTACTAATTGTCGAAATAATTTAATCTACAAAGAGGAAAACATTATTCTTTTATTTATTTGACATAATTTAGAATTCTCCACTTGTACGGTTGATTTTCGTTAATAAATGACAAACCATCTGCACTATCATATAATAATTGTATAAAAGCTGGAGTATTAAACTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCTTAACTTAGTTGCTTTATGTAAATATATGGAATAAAATAAAGGGGAAATAAGATTTTTTTCCTAAAAGCAATATATTTTTGACTACTTTTGTAAACTTTTAGGTAAAAATCGCT # Right flank : CGCACTTATTGTTTAGCAGACCCTTGCAAATCGAGTAGAGGGAAAAGCTAGATAACTTTTCTCCCCTCTCACACCACCAGTATATACGGTTCCGTATACGGTGGTTTCATTTGGGATCAGTTTAAGCACTCTTGGGTCTTTGATCTTCTGACTCAATGTGCGCATTAATCTGTCGTGATGTACTTTATCGAAGAACTTCTCTAAATCCATATCGATAACCCAACGATAGCCATCTTTTATATAGCTTCTCGCTTTCCTGACCGCGTCATGTCCTCGTCTATTCGGGCGGAAACTATAACTGTGTTCAGAGAATGTTGGGTCATAGATGGTTGTTAGAACTTGTGCGATTGCTTGTTGGAGGAATCGGTCTAACACGGTAGGAATTCCTAGCTTCCTCATTCCGCCGTTTGGTTTCGGGATTTCGACACGACGAACGAGTTGAGGATAGTAGGTACCTCCTTCGAGTTGTCCTCGAATGGAAGCCCAGTGTTCCATGATAT # Questionable array : NO Score: 8.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 18966-19532 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMJ010000020.1 Virgibacillus sp. 19R1-5 NODE_16_length_74358_cov_33.315744, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18966 32 100.0 34 ................................ GTTTTAAATAATCAGCCAACCTGCTCACTCCCTT 19033 32 100.0 35 ................................ ACTTAAAAAGTTTGCTATGTTCCAACTGTCATAAC 19101 32 100.0 34 ................................ AAAGAAGAACAGGAAAAAGAAACAGGAAACTATA 19168 32 100.0 35 ................................ GCGTAGGCTGTATGAAAATATGGTGTTCGTCCATC 19236 32 100.0 34 ................................ TCTTACTTAAAACCCTCCCTGTACTATTGTTTCT 19302 32 100.0 33 ................................ TAGTTCATCTTCAAATTCAATTAAATTTGACAT 19367 32 100.0 35 ................................ GTTTGGTGCACCTTCTGGTATTTTATCTAACTTGC 19434 32 100.0 35 ................................ ATCTGAAAATCTCCCAAACATATTACTTACGGATA 19501 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 9 32 100.0 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AAAACTCGTTTTTGGGATCTAACCATTATAAAACATCTTTACTAAATTTAAATATAGCAGTATTTTTACTTAAATTTTCCGTTTATACTGCTGGAGTAATTTAATTTTACTTTTAGTTTACAGATTACCCTGTGAATGAAATGAAATACCAATTATGCATTTTGCTACTAATTGTCGAAATAATTTAATCTACAAAGAGGAAAACATCATTCTTTGATTTTATTTGCACATATTTTAAGATTCTTCCACTTGTACGATTGATTTTCGTTAATAAATGACAAACCATCTGCACTATCATATAATAATTGTATAAAAGCTAGAGTATTAAACTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCATTATTTATATTATTTTTGGCAAATATTGGAAAAACGAAGAGAAAACGTTCATTTTTTTAACTTTCCCTCTCTAAAACTGGAAGTTTTTTGTTATATTTGTAAAATTTTATGTTAAAATCGCA # Right flank : TGTCGCACTTATCGTTTAGTAAATCCTTGCAAATAAAATACAGCACCTCATTTTAAAAAGAGGCGCTGTTAAACTGAAACAGGTATTCAGTTAAATTTCGTAAAATCACCCGCTAGAAAATATCTGGGGAAACGTCAAAATCTAAAACACAATATAGCCTAATATATTTGTACTTATCCTTACTATTATTCACTAGCTAACTCCCCCATACTCCTTACCTGAAATCCGGTTTAAATTCTCCAGTAACTGTTTGATGCCCATTGTTGCGCTCGTACTGTTCTACCCTTTCTAGTTCAAAGCGATCCATGATAGGAATGTCATTAACTGAAAATAGGTAGGAATCCTCTGCTGGTACATGCTCATACCATGCCCAATTTGGCACAACAAAATAGTCGCCTGCTTTCCAATCGAATCGCACACCATTTATAATGGTATAACCCGATCCTTTGTAAGCATGATAAATAGTAGAATGGGTATGACGCAGTGATTTTGTATTAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //