Array 1 182285-181002 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGJF01000001.1 Helicobacter pullorum strain NCTC13156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 182284 36 100.0 36 .................................... ATTTTTACCATATTTGTAGGTTCGGATTCTTTTCTT 182212 36 100.0 37 .................................... TTCTATAGTCAGAAACTTTTTCATCGCGTGAATACTC 182139 36 100.0 38 .................................... TAGTTTATTCCATCTCGGCACGCGCAGCTCTTATCTCC 182065 36 100.0 37 .................................... TTGTCAGAATCTTTGTGAATTTCTAACATGTTTTCTC 181992 36 100.0 38 .................................... AATTTCACTATTAGCTTCTTGTAATGGATCTTTACACC 181918 36 97.2 35 ......................A............. AATAAATCTATTACAGACAAGAAAGGCGTTTTATT 181847 36 100.0 39 .................................... CCCAAAGAAGCCTTATTTTAAATCCCAAGTTGTTTAAAT 181772 36 94.4 38 ................T.....A............. GGTCTTTATCGACACCTACAACCTTACCGCAATACTGA 181698 36 94.4 35 ................T.....A............. ACTTTGGCTCTTCCTCTTTTGCCTTTAACTCTGCC 181627 36 97.2 37 ......................A............. CGATGGACTTTAATGGTCTCGAACCGTACACAATAAG 181554 36 97.2 38 ......................A............. CAAGGGCGATTGCATCAGTAACGTCTATGTTTGGCGAA 181480 35 94.4 37 ..................-...A............. CAAAAGTTTGTAATACATTGTTCTAAATATTTCTTTT 181408 36 94.4 36 .....................TA............. ATAAAATTTTGAATAATTGTTTGTGGAAGAGATTTA 181336 36 97.2 36 ......................A............. CTGTGTAGCTTAACGGTCTCATATCTTACGCAATAG 181264 36 100.0 39 .................................... TTTGCATTTGAATTCGTATTCTTTAAAATATTTGTTAGG 181189 36 97.2 41 ......................A............. TTTATCAACACCACATTTTTAATTTCTGAATTATGTTTTTC 181112 36 97.2 39 ......................A............. AATCGATAAACTTCTCCTAAAGAATAGAACTCAGAATCT 181037 36 94.4 0 .....................TA............. | ========== ====== ====== ====== ==================================== ========================================= ================== 18 36 97.5 37 ATTTAACAACACGACCCGATTCGAGGGGATTAAGAC # Left flank : AGTCTATGAATGCCAACTGACCAAAAAAGCACTCAAAGAAATAAAAACCAATCTCAAAAAAATACTCAATCGCAAAACCGATTCAATCCGCCTTTATCGAATCTGCAAAAACTGCAACAACAAAAGCAAGAGCATAGGCAAAGGAAAAGAACCATTTGCTCCCATAGATTTGAACTTCTAGCGCTCAAAAGAGATTTGCGAAGTTGTCATTTTTTTAAGCCCTACAACACCGATAAATACGCACCCCAAATAACTTAAAATTAGCTAAAATTTAGCAAATCATACTTTTTTTGCATTTTTAGCAAACCAATTTTTTATCCAAACCACACAATTATCGAGATTAGCAAGCATCCAGCTTCCACAATTTTTGCCCAAAATTTGACATTTGCGAAGTTTTTACAAAAAATCTCCCACAAAGCCAAAAAATATGGGATTAAATAAAGATTTAAGTTTGCTTAATATAAAATCTCAAAATCAAACGAGCCTCGTTGTCTCCAGCT # Right flank : AAATTTGCTTCTCCAAAAGGAGGAACATACTATGATTTAACAACACAACCTATTTCAAAAGGTTCTAATTTTCCAAAGATATTAGTATCCATCATTTAAAATTTATGATAATATAGCGTTATATTTAAGCCATACTTTTAAGGAATTCATTTGATAAAAGAACGCACTTTTGCCCCTTTATTGCCAGATTCATTTCAAATTCTAAGCCACAAAGAAAAAAAGGCTTTTTTAAAAAAAGAAACCATACTCAAGAAAAAAATCCACTATTTTGACTGGACAGCAAGCGGATTAGCCGCAAAATGCATTGAAAAACGAATAAGAAAAATACTGCCATTCTACGCAAATCCACACTCAGAAAGCTCCTCACATTCCAAAATCATAGGGGAAATTTACGAAAATGCACGCAAGAATCTCAAAACATTCTTTGGGCTTGATTCTAGTTTTGCCCTCATTTCTTGTGGTTTTGGCTCAAGTGCAGCAATCAAAAAATTTCAAGAAAT # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCGAGGGGATTAAGAC # Alternate repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 386179-386945 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGJF01000001.1 Helicobacter pullorum strain NCTC13156, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 386179 36 100.0 30 .................................... CCTACAAAAGCCTATGTTCTACACGATTAT 386245 36 100.0 30 .................................... TGACCCATAGTAGAATTAACAGCTTTATTT 386311 36 100.0 30 .................................... ATAATCGGACTTCTTTCCATCAGACCTAAA 386377 36 100.0 30 .................................... CATTGGATTAGTTTTACTGGTTCTACTGCT 386443 36 100.0 30 .................................... ACCATTACGCCAGATAAGAATTGGCAAACA 386509 36 100.0 30 .................................... ATGTTTTGCTAGACAATGCAACAGGTGCTA 386575 36 100.0 30 .................................... TACGCCTACTATAACAAACCCTAAGACTTT 386641 36 100.0 30 .................................... TTCTTAAAATCTCTTATTCTATCTCTTTCT 386707 36 100.0 30 .................................... ATTATGGTTATTGCAAGTCAATTAACATAA 386773 36 100.0 30 .................................... TTGAAGATGCTGTACATAAGTTAACTTGAT 386839 36 100.0 30 .................................... TTCTAGTGTTGAAAATATTGATGATGAAAC 386905 36 91.7 0 .........................CC....C.... | AG,AG,T [386928,386936,386939] ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.3 30 ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Left flank : AGGGGGAGTATCCGCTGTCTTATCATCACAGAGAAGCAGTTTGATTCTATGGAGATTTTGCTAGGTGGGGTGGGATTCAATGAGATGATGAATGAGCCAAGAAATCTCGTGCTTTTTGGATTTGATGAGAAAAAGGGAGAGTATGTGTATGCGGATAATGATAAAGATAGCGATGAAGAGAAGTTGTTGCAAACAAAATCAAAGAAAACAAGAAATATACAAGGAAGTTTATTTGAGTTTTGAAGATAGAATGGTGCGCTACTTAGGATAATATGTGTAGAATAGTAACAATATAGGGAATATAAAAAACAATAAAATGTGAAAAGTATTATGTAATATAAAGTAAAAAAGTCTTGGCAAAAAGGGATTTTTGGAGGTTTTTAATCTCACACCCTGCACCTTTACTCCTAGTACTGCCAAGAAATACTAGGTAGGTTTATTTTAGTCCCTTTTTAAATCTTCTTTTGCTATTGTAGCATAAAATCCCAATTTTTTGGTCT # Right flank : CCATTACTTTATTGTTTTTGATATAATTTAGGTTTTTTGAAATATTTTAAATGATGTAATTTTTGATTGCTATAAGATAGGTTTGCTATATTTATATTTTGGATTTGTACGATAAGCTAATGTGTGGTGAAAAATTAAGAGTTTTAGATTGTCTTATCTTTTGGGGTTTTTCGTAATTTAGACTAAAAAAGCGAGTATAACACACTATAAGATTCAAACAAATATTTTAAGAATTGAAGGGAAAATCATGGTATATACTACTTTTTACCAAAGTCCTATTGGCACGATACTTTTAGCAAGTAAAGATAATAGGCTTATAGGTTCTTGGATAGAAGGGCAGAAATATTATTTAGGAAATCTTAAGGAATCTACACAAGAAAAAGACGATGAACCTATCTTATTGCAAACTAAAATATGGTTAGACAGGTATTTTAATGGAGAACAGCCTCATACTTTTGAATTAGACTTGGCGCCTAATGGAAGTGTGTTTGCTACAAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //