Array 1 10774-8244 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUOQ01000012.1 Rothia mucilaginosa strain 902_RMUC 16_22554_513350, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10773 29 100.0 32 ............................. GAAGGCGCGGGGCGTGTCACCCAGTTCTTCCT 10712 29 100.0 32 ............................. GTTGCAGCCGCCTCATCCGGGCTCTTAAAACG 10651 29 100.0 32 ............................. TCAGCCAACGCCTTTAACCTCCTTCTCACAAT 10590 29 100.0 32 ............................. TTCAACTCAAGAATGAAGGGCTGTTGTCATGA 10529 29 100.0 32 ............................. CGGATTCTTCCGCATTCTTTTCTTCATTCTTC 10468 29 100.0 32 ............................. TAGCGCGGTAACTTCGCCCGTCGCCTTATCGA 10407 29 100.0 32 ............................. GTGGGCGGCGGTAGTGAGGACGAACCGGAAGA 10346 29 100.0 32 ............................. CGTCCACAACCCATCATTCGATGAGATAACAC 10285 29 100.0 32 ............................. AAGGGCGCGGCCGTGCTCATTGAAGGCTATGA 10224 29 96.6 32 ............................T AAAATCTTCGGTAAAAGGCGTAATAGCGGACA 10163 29 100.0 32 ............................. TTTTTACAGGCGCGCCGCCGCCGCCTCAACCA 10102 29 96.6 32 ............................T GAGGTACGGGTTCCTTTTACCTAATTGTTTTC 10041 29 100.0 32 ............................. CGGCGGCGCACGCCGGGGCAATATCTACCGGC 9980 29 100.0 32 ............................. AAGGGCGCGGCTATCCTTGAAGCGGTTGAAAA 9919 29 100.0 32 ............................. ACCGCCGCCGCTGTAGCCGTGGCCATGACCGA 9858 29 100.0 32 ............................. CTCACCCGCGCGGTCATGGACTCACTCACAAG 9797 29 100.0 32 ............................. CCACGCAACATCTGCATAGTCCCACTCGACGC 9736 29 100.0 32 ............................. CCGCGCGGGCGGTAATTCTCATCCCTCATTAA 9675 29 100.0 32 ............................. CCCTCACGCCTTCAACCTGTCCCACACAGCCC 9614 29 100.0 32 ............................. ACCCCGCAGCTTGTCCAGTACGCAAAAAATAA 9553 29 100.0 32 ............................. TCGGAAACCTTACAGACCCAAACCGAAAGGAA 9492 29 100.0 32 ............................. TGCCAGAAAAATTGCACAAAAACCCATCCGCA 9431 29 100.0 32 ............................. GAAACGCTAATCATGGCACACCTGCACTCTGA 9370 29 96.6 32 ............................C CGGGGGTTCAGACCGAGCAGGTCAGCGTCCGG 9309 29 96.6 32 ............................C GGTAGGCTACGGCGGCGTCGGCGCGGTAGGGT 9248 29 96.6 32 ............................C AGCTCATCGAGGCGTACCGCACCGACTTCACG 9187 29 96.6 32 ............................C GGAGTGGGAGCAACCGAAACCTACAACCCGCT 9126 29 96.6 32 ............................C CAGCCATGTTAAATCCTCTCAGGCAATCGGTT 9065 29 96.6 32 ............................C TCGCCAGCATTGGGGAATACTGTGTCGAGTTC 9004 29 96.6 32 ............................C GGACATTCTTTTTTTCTAGATTCCCTTCACAT 8943 29 96.6 32 ............................C ACAACCTGGGACTTCTTCTCGTTCAAATCCCC 8882 29 96.6 32 ............................C ATCAGACGCTTGGCGGCATTGTTTCGGATTCC 8821 29 96.6 32 ............................C TTAAAGGTGATGTCCTGCGTGAATCCGTATAC 8760 29 93.1 32 .....G......................C TTGTGCTCTGGCAAACCCGCGCCGGGTTCACC 8699 29 96.6 32 ............................C CTCACGAGAAACCGGGGCGGAACCGATAGACT 8638 29 96.6 32 ............................C GAGCCAACGGCAAGTCGCCTAGCTCTAGCTCA 8577 29 96.6 32 ............................C CTGTCGGTGCGTGTGAAAGCCGAACGCAGAAT 8516 29 96.6 32 ............................C CAGGTTCGCCTGCGCAGCACCCTCATCGGTGA 8455 29 82.8 32 ...........ATC..T...........T TGTTGCGAGTTGTGGAGTACAGTGTCGCTGGT 8394 29 96.6 32 ............................C GGCTGGGATGATGCCCCGCTCGAATCTGTCAC 8333 29 96.6 32 ............................C TGCCACTGCATCGTCAGCTTCAACGCGTTCAG 8272 29 69.0 0 ...C.......ATC..........TTTTA | ========== ====== ====== ====== ============================= ================================ ================== 42 29 97.2 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : AGATGCTTTTGTGGGATGAGTACACGGGAGGTACTACGGCACGTGCGAATTTCTCTGGAGACGAGTCATGATTGTGATTGTGTTGTCAGCTTGTCCGGTGAGTCTTCGTGGTGATTTGACGAAGTGGCTTTTGGAGATTAATCCTGGCGTGTTTGTGGGGCGTGTGAGCGCCAGGATTCGTGAGAAGTTGTGGGCACGTGTGTTGGAGTCAGGTGGTACTGGTCGTGCGACTATGGTGTTTCCGGCGGATAATGAGCAGCGGCTTGAGTTTCGGGTGAATAATGCGGATTGGGAGCCTGTCGATTTTGAGGGTGTGAAGCTGATTTATCGTCCGGTGGTTCGTAAAACGGTACCTAAGTCAGGGTGGAGTAAGGCGAGTAAGTATAGCCGTGCTCGTCGTGGTTAGGAGTTACTGTTTATCGTGTATTCTGGAGTCAGGCTCTGGCTCCAAAGTGATTCTATTTTGCTGATGTAGGGGGTAAAACCCCATGTCAGCAAGT # Right flank : GAAAGCCTTGTTTACCAGCCCCCCCCCAAAAAAAAGGAAGGGCTGGTAAACAGTGCGCCCAAAAGACCAGCCTAGCCGCATTCAATTCGCACCCCGGTGGCTCCGCAACGCCTCCCTCTCCTTGCCCCTCCAATAACCCATACCAACTTCCGGCAAACACTGCCAGATAACGCCCCTACTTCGTTGAACACCGAAAATGGGCGTAAAATCACCGTCGGTTCATCTTCGCTTTATAGGAAACCTTAAGGTACGCTAGATGACTGGGTCAGGGAAATCGTGCCGGTCTCACTCACCGCGCATCCGCCCGACAGACACCCGCACCCCGGTATTCTGCGTCTCACTCACGCACACGGGGGAGGGAACCCCACGTATCGGCCTCACTCACCGTTTACGCCGCTGTCCGCGCGTCCTGCCACCCGTAACTCACTCAACTCAAACAAGAACTGAATAGGACAATCATGCCCTTGATTAACCATCGACTCTCACGACGATTCTTCGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //