Array 1 66425-65907 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXC01000020.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4420 NODE_20_length_89612_cov_73.947428, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66424 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 66363 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 66302 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 66241 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 66180 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 66119 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 66058 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 65997 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 65936 29 93.1 0 ............TC............... | A [65909] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84292-82739 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXC01000020.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4420 NODE_20_length_89612_cov_73.947428, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84291 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 84230 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 84169 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 84108 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 84047 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 83986 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 83925 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 83864 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 83803 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 83742 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 83681 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 83620 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 83559 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 83498 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 83437 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 83376 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 83315 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 83254 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 83193 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 83132 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 83071 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 83010 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 82949 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 82888 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 82827 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 82766 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //