Array 1 167047-167315 **** Predicted by CRISPRDetect 2.4 *** >NZ_QESV01000013.1 Pectobacterium versatile strain SS96 SS13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 167047 28 100.0 32 ............................ TTAATTCAGGCGTAAAAAAACCGCTCGTGGCG 167107 28 89.3 33 G..C........A............... ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 167168 28 85.7 32 G..C.......CA............... CACGCGCCCTGATTCAGGTCGGCCTTCTGCGG 167228 28 100.0 32 ............................ TCCCGTTGTTTGATTAGCGCCCGAGTTAATGC 167288 28 78.6 0 G..C........AC......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 90.7 32 ATTTACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AACCGACGGACGTTGGCGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGATCTCATCTACTGGTCTTGCGCCGCATCGGGTTTCTGCTTTCTGGCGCTCTTTCGGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGGATTCAATATTGGCAGGAGTATGAAAACGACAATGTGATACTCTCCCCGATGCCCGGTGAACTGTATGTTTCCATGCTGGTAGGCGCAGGCATGGCCGCCATCGGCATCGTGAAATATCGACACGCTCGGCGCAACCCAGTCGCTCAACGCCCAACCTATGCGAAAGCGGTCGCTGCATTGCTGCTCGTTGCGCTTTATTTCGCGCTCCCGCTGCATCTCTACCTACGTGAACCTCTCCCCTACTGCGCCTTCAGCCCTGACGGACAGCAGTTAAGTATCTGTCTGGGAGAGAATGACGAGCGGATTATTGTGGAGTGATGA # Right flank : AATAAAGCTAACCTAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAACTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGCCTTGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 174600-174208 **** Predicted by CRISPRDetect 2.4 *** >NZ_QESV01000013.1 Pectobacterium versatile strain SS96 SS13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 174599 28 96.4 33 T........................... CATCTATGCTTTCACCTTCATTTATCTCCGTAT GA,T [174592,174595] 174535 28 96.4 32 ............G............... ATACCGCAACGCCCAGCAGGATGAGCAACGCA 174475 28 100.0 32 ............................ TTGAACAGATTGCATGGCGCACAGGCTGGGAA 174415 28 100.0 32 ............................ AGGATTGGCGCTCACTATTCATGCCATTATCC 174355 28 96.4 32 .............C.............. CCTAAATCGGGATAGCGCATTGAGTACGCCGT 174295 28 92.9 32 ........T....C.............. TTTGTTCGTTCAGCGTCTAATGCCGCTATTTG 174235 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 94.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCCGCCTGAAGCCGAAAAGCAGGGGCTTCCATCTGGTGACCGACGAAATACTGGCGCAGGTCACCGCACTGCGTCAGATAAACGTCGGGCTGATGCAGGTGTTCATCAAACACACCTCGGCGGCGCTAACGATTAACGAGAATGCCGACCCTACGGTGCGGCAGGATTTCGAGAGTTTCTTTAATCGCTTGGTGCCGGAGGATGAACCGTACTACCGCCATACGTATGAAGGTAGCGACGACATGCCCGCCCACCTGAAAGGCAGCTTGCTCGGAAACAGCCTGACGCTCCCCATCACCAACGGACGCCTGAACATCGGCACCTGGCAGGGCATCTACCTGTGCGAACACCGCAACCACGGCGGCAGTCGCTCGCTGGTTGTCACGCTCAACGGGGAATAACGCCACGAAATGCGTCGCGCCAGCGACGCATCCCGATAAGCATCTAGCTGCCTGTGCGGCAGTGAACGCACCATCAGCCAGCAAGCGCTACTCTTCCAT # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTATGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCACGCCATATTGACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGCACACCAAATCCTAATGATTCTTGGAAAACGGCAGTATTTGGCTGTACCGATCCCATCTCGTCGTTTG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 79284-82182 **** Predicted by CRISPRDetect 2.4 *** >NZ_QESV01000005.1 Pectobacterium versatile strain SS96 SS5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79284 29 100.0 32 ............................. GCGTCGTGCTGACGCTGGGCGCAACCAAAGAC 79345 29 100.0 32 ............................. AACGGTTTGGATACCCATCAGGTCAGTGACGA 79406 29 100.0 32 ............................. ATTCACTGATACCGAACTGCTGGATGATGTCT 79467 29 100.0 32 ............................. AGAGACCCTCTCTTTCATGGTGAAAATGCCCC 79528 29 100.0 32 ............................. CGGCTGCGGCTGTTTGCAGGTTGACGTTGTAT 79589 29 100.0 32 ............................. TGTTAACAATCGAGGTAACAAACTCGTCAATT 79650 29 100.0 32 ............................. AAATAGAGCGAATGAGATTAACCCGAATGTCT 79711 29 100.0 32 ............................. ATCCGCCACGCCACAGGATCTTGTTTCCCCAG 79772 29 100.0 32 ............................. TGCTTTGGTGGTGTGGTGGCAGTGCGCTACGC 79833 29 100.0 32 ............................. AGAGCAATTGCATCGTACTATCACAAGGCCGC 79894 29 100.0 32 ............................. TTGGCAGCGCTGCGTCCGGCATTCACACGTTC 79955 29 100.0 32 ............................. GGAATATCACTAGATTGGTTATTGACAGGAAC 80016 29 100.0 32 ............................. CCCGTTGCTATCCAGCATGCGATAAGGTTTGT 80077 29 100.0 32 ............................. CCGACCGAAAGACAGAAGTTCAACGTGTTTTT 80138 29 100.0 32 ............................. GCTCGGCAATCGGGAAGATTATCGCCGATCAA 80199 29 100.0 32 ............................. CACCCAGAACACTCGGGCGTCTTTTTGGTCAC 80260 29 100.0 32 ............................. CCGCACGTCTTACGCGGCACAGATTGTTGTGA 80321 29 100.0 33 ............................. CTCCACGACCCAGCACAAACAAAATAGCCGTGC 80383 29 100.0 32 ............................. CGTATCCGTCAGGTCACAGGGCAGCGCGATCC 80444 29 100.0 32 ............................. TGGTCGCCTTTCACGCGGGAGGACGCAATGCC 80505 29 100.0 32 ............................. CGCACCGGTTGTAAGGTTCGGCACCGGCATAT 80566 29 100.0 32 ............................. AGAACGACATTACCCCCGCCACGCTCCGGGCT 80627 29 100.0 32 ............................. TGCTCAAGGCGTCGATGCCGCTCGTTCGTGAT 80688 29 100.0 32 ............................. TGATTGGTAAATATCTGGGTGCAGATGCGTAT 80749 29 100.0 32 ............................. GATCCGAGCAAATCCGTCCAGCACCAGACGCT 80810 29 100.0 33 ............................. CAGACAGAGGGATGAGGAAGTACCTCAGGGGGA 80872 29 100.0 32 ............................. TAACCGCCACGGCCGGCCACGTTGTGAAACGC 80933 29 100.0 32 ............................. TGATGCTTTACGCCTCCTTTCCCTCACTACGT 80994 29 100.0 32 ............................. CGATAAGAATAAACAAGGTTAAGGCGGGTAAC 81055 29 100.0 32 ............................. CTCGCTGAGTTGGTGGGTGTGGAGGATAGTAA 81116 29 100.0 32 ............................. AAACAAATTCCATTCGCTACCGCTCAGGCATT 81177 29 100.0 32 ............................. CATTTATTGATGCAATGCGAATAAAGTCCGGC 81238 29 100.0 32 ............................. TGCGTGTCGCCGTGACGCGAGACTTAGTAAAT 81299 29 100.0 32 ............................. GTTCCATTACGTATGTCGTGGAGGATTAACGA 81360 29 100.0 32 ............................. ATGCAGCTGACTTAACTAAAAGCAAAGTAACA 81421 29 100.0 32 ............................. AAATGTCCGGTAAATAACTTACCGACATTAGC 81482 29 100.0 32 ............................. ATCAGATCTTCACGTTCGCGTGGTGTCGCTGA 81543 29 100.0 32 ............................. ATATATAGGGCTATTGGATTTAATAGATTGGT 81604 29 100.0 33 ............................. GTAAACAGTCCCGAGGGTTAGTTGAAGTCAACA 81666 29 100.0 32 ............................. TTTCTTTAGCATTACCCCTTAGATTTCTGGCT 81727 29 100.0 32 ............................. GACGCGCAGCTTCCCGAATCGCTGTGGCAACG 81788 29 100.0 32 ............................. GTATTGAACCTGCTAACGCGCCGTCAACCATT 81849 29 100.0 32 ............................. AACCTGTCATAGCACGCAAGGCGCTTTGTCCC 81910 29 96.6 32 ..........T.................. ATGCGTATTGCTGTGGCAAACGGTATTACGCT 81971 29 89.7 32 ............TG..T............ GACACCGGGCAAATAGAGCAGAACTGTGATGT 82032 29 89.7 32 A.......T.......A............ AAGTCGTTACGATTGCCGCCCCATGTTCCCGT 82093 29 100.0 32 ............................. TTTTCAGTCAAAGCGCGTGATGTATATATCGA 82154 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGACGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCACCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GATGTGAAATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCTAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84390-85335 **** Predicted by CRISPRDetect 2.4 *** >NZ_QESV01000005.1 Pectobacterium versatile strain SS96 SS5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84390 29 86.2 33 .A........................GGA ACTTCGCATTCAACGTTCGTGGTCAGCACAAGA 84452 29 93.1 33 .A.........................G. CGTAAATAAAGTAATTCTTGTCGGTAATTTAGA 84514 29 96.6 32 .A........................... TATCTGGGACGGGAAGAAAAGCAGCGCCGGCA 84575 29 96.6 32 .A........................... GATGGGCTGAAAATAAAGCTCCATGACCCGAA 84636 29 96.6 32 .A........................... CCGGTAAAAAAAGAGATTCGTGGACTGGCATG 84697 29 100.0 32 ............................. TCACAGGTGCGACGAACTGCATGCATTGTGGT 84758 29 100.0 32 ............................. AAATGAAATTTTTCTGGGTATGGGAGCAAAAA 84819 29 100.0 32 ............................. TAGCTAGGGGCTACAGGGTCAGGTTGTTTTTG 84880 29 100.0 32 ............................. TTCGTCAGCGTCCTGCTGTGAGTTAAAGATAA 84941 29 100.0 32 ............................. TGCCCCCACTCATTTCCTAATAACGCTGGAAT 85002 29 96.6 32 .............T............... CTCGCTGGAACCAACGACTCCCTGCTGATTAA 85063 29 96.6 32 .............T............... GCAGAAATTGCCGTCATTAGCACGGTTACTAT 85124 29 100.0 32 ............................. ATGGAAAACATCATTGCAATGATCCGTCAGTC 85185 29 96.6 32 ............................A TCGAGTGCGTCTTCAAGCGTCGGCACTGGGTC 85246 29 100.0 32 ............................. GCAGGCTGTTGTCACAAAACTACTCAGTACGG 85307 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTCTGCTAATTATTTACTGTGTTACTTCAAGACGACGGATATGCATTGATTGCTTCCAATTTATGTCAATATGCTTGTAATCATTAGATATAGTGGATGAAAAACTTTGGTATTTACAAGATATATTGAAATTCGGTTGAGAAAGAATATTTTTAACAGAGAAGTTCTTTACCTAGAAATAGAATCATAGTGGTATAACTCTTGCAGAAGAAATGTACAGCGTTTAATTCAGCGACTGAGCGTTTTCCTGCTGTCTGAAATCAAACTGGCAAATCAGGGAAACGTAGTGATGGTATGGGCGGCGAATGTGGAATTCGGTTTTGGGCTCCAAACCTAGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGAGA # Right flank : GGGCTTATACCCCTTATTGCATGTTGGTCTAAATATCCCCTACACGGGGTCAAATTCCGCTTCTGGTTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCTATTTTTGCGCCCACCGTCACGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGATGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCATAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGACACGGTTGAAGGCCTTGTCAGCAGTGGTCGGTTAGGGCGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //