Array 1 99-1836 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYCT01000269.1 Streptomyces sp. PRKS01-65 NODE_269_length_10097_cov_60.173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99 29 96.6 32 ...C......................... CCGAGCTTGTCGCGGCCGATCCGCAGGAACGC 160 29 96.6 32 ...C......................... GCCCAGGGATTCCCTCTTCTACCGTCACGACC 221 29 96.6 32 ..T.......................... TCGACAGTTCCGCCGTCCGCCTGGGCGAAACG 282 29 96.6 32 ..T.......................... CCAGTCGATCTGTTCCTGGGTGTGCCGGTCGT 343 29 96.6 32 ..T.......................... TCTGGGGGTGTGGGCAGGACAGGCAACAGGTC 404 29 96.6 32 ..T.......................... ACGTTCCACCGGCCCGGGGTATGCGAGTTCGA 465 29 93.1 32 ..T.........................C ATGGACGAGGCCCTGCGGCAGGTTCGCGGAGG 526 29 96.6 32 ..T.......................... CCCTGTGGTGGGGGATCAGAAACGATCAGAAC 587 29 96.6 32 ..T.......................... CAGGACCCCGTCAACATCAACACCGGCGTCCT 648 29 100.0 32 ............................. TCAGCTCCCCATTGCGATGTAGTCGACGGTGG 709 29 100.0 32 ............................. TACGTCGCGATCAGGCTCGCGGACGGTCGGTC 770 29 100.0 32 ............................. AAGACCGCCAAGCGGATCTACTTCACGTACCT 831 29 96.6 32 ..................C.......... GCTCCGACGCCAGCTGACACCTTCGACAAGAT 892 29 100.0 32 ............................. CAGCTACCGAACGGGCCGAATGCCGTGTCCTC 953 29 100.0 32 ............................. AGTGAGTCCCATGTACCAACTGGACGTGATGG 1014 29 100.0 32 ............................. CTCACCCGCACGGAGATCGCGGGCATCTACGG 1075 29 100.0 32 ............................. CGGGAGGGGTATCGAGGGCGGTCGACGATGTC 1136 29 100.0 32 ............................. ATCATCCGCAGCATGAGTGCGTCCGCGGCGAC 1197 29 100.0 32 ............................. CGGACGGGTACGAGATGGAGGCTCACGTTTCC 1258 29 96.6 32 ....................A........ TCGAACCAGGGCCACGAGATGGCGGCCGTGAT 1319 29 100.0 32 ............................. GCAGCCCTCGTGCCGCAGCCCCTGGGCGATCG 1380 29 96.6 32 ...C......................... TGGACGCCGACCGCGCCCGCCCTGCCCGTCAC 1441 29 100.0 32 ............................. CAGGCGCTGCGACCGGAAGGCGAGCACCAGGC 1502 29 96.6 32 ...C......................... GCGAAGCGGACTGGTACGGCGCCGGACCCGTG 1563 29 96.6 32 ...C......................... CACCCGGGATCATCGTCACCCACGGCTGGCAG 1624 29 93.1 32 ...C...T..................... ATCGTACGAGGCGACAGCTACAAGGTCACCCC G [1641] 1686 29 96.6 32 ...C......................... GCCAGGATCGCGCCGTCGATCCCGACCGGCAC 1747 29 86.2 32 ...C.........G.........CT.... CGTGATCCGGGGGCGGCCATCGGCTACGCCAC 1808 29 75.9 0 ...C......T.AG.......A..C...C | ========== ====== ====== ====== ============================= ================================ ================== 29 29 96.6 32 GTCTTCCCCGCCGACGCGGGGGTGATCCG # Left flank : CGATAAGGTGACGACATGCAGTCCTGTAGGTCACGCCACAGCGTCCCCCGCAATGCAAAGAAAGTGCAAAGCCTTTCTTGAGGTGCAGGTCAGAAAGGG # Right flank : CGGAGGTAGCCAAGCGGGGGTGGATCGGGGCTACGTCCTCCACATCGACACGGGGCCGAGCGTCAGCCCTTGTCAGTGCGCTTTCGCACTCGAACCTGCGGCCAAGCGCTTAGAAGGCGCCTGCTCTGTTCCGGCGTTTCCGTCCGTTCAGGGTCGACTGCTCGATGGGTCGATTCTGGCGCCAGCATGGCGGTTTGTCGTGTGGTTCGCCGACGGCAGACATGTTGATCCCGGCAGGGACTGGAATCGTGCGGCGAAGCAAGCGAACCTAGATCAGCTCGCGGAAGAGTGTGTGCGTGAGCGGGGCAACATAGCCGACGATTGCCGGTTAGCCAAACCGGCGATCCGCCGGACCATTGGAGAAGTCCGGTCGCCGTGCGATGTGCATGCCATGGCCGGACGGCTGTGTCTATCTCCACACCTCACTTCAAGGAGCTTTCCCGTGGCCGCAGTTGTTAGTGAAGGAACGTTTCATCTTTCCGATCGGCAGTGCTTCGCGA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCGACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7259-8263 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYCT01000307.1 Streptomyces sp. PRKS01-65 NODE_307_length_8838_cov_50.0346, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7259 29 100.0 32 ............................. GCTGAACGTCTGAAGGAACTGTGGACTAACAA 7320 29 96.6 32 .....................A....... GCGGTACCGCCAGGCCCGTTCCGCAGGCCCCT 7381 29 100.0 33 ............................. ACGAAGAACAGCCCGCCGGGGACCGGGTGCGGG 7443 29 100.0 32 ............................. CGCTGTACCTCAACGGCCGCTCCACCGTGTGG 7504 29 100.0 32 ............................. TGCACGGCGCCGGTGGTGGCGGCGTCGGCGTC 7565 29 100.0 32 ............................. ATCCTCGCCGACATGGGCCAGGTCGTGGCGCA 7626 29 100.0 32 ............................. CGCACCTGGCAGGACAGCACGTCCGCGCTCAA 7687 29 100.0 32 ............................. CAGATCGAGGACCTCATCGCGCTCGGTGTCTG 7748 29 100.0 32 ............................. ATCTACGACAGCGCCAGCGGACCGGCGCCCGG 7809 29 96.6 32 ............................A GGCGGCCGGTGGGGCCGCTGCCGGGCGCACCT 7870 29 100.0 32 ............................. CTGCCCGAGGGAGCCGCGCCCACGGCCGCCGA 7931 29 100.0 32 ............................. ACCCTGATGCGGATCACGGCCTCGTCGCCCAG 7992 28 89.7 32 ........T........-......G.... GCCAGCCATGGGCCGCCGCTGGACCTCGGCTT 8052 29 96.6 32 ........................G.... TCGGCGTTCCGGTCCGGGTTGGCCAGTTCGAG 8113 29 96.6 32 .................T........... CTCATCGAACAGATGATGACGCAGATCGCCAC 8174 29 96.6 32 ........................G.... CGTCCGACGTCGGCGCCGCCCACACCCGTCCC 8235 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 32 GTCCTCCCCGCCGACGCGGGGGTGATCCG # Left flank : GGACGTCCAAACCCTTTTGACCCCGTCCCACGCCCACACCACCACAGCCGATGACGACTCCGACGAGGAACACTCCGAACGGCGTGACGTGAAGATGGTCCACCTCTGGGACCCCAAATCCGGAGCACTCCCAGCAGGCGTCAACTACGCTGACGGAGGCGACTGATGCCCTCCATGGTCGTCATCGCCACCACCGCGGTCCCTGACCACCTGCGCGGCGCTCTCAGCCGGTGGACCAGCGAGGTAGTACCCGGCATCTTCGTCGGCAGCGTCTCCGCCCGCGTCCGCGACGAACTCTGGCACGCCGTCACCGAAGTCGTGGGCAACGGCGCCGCCGTCCTCGTCCATCCCGCCGCCACCGAACAGGGATACGCCATCCGCACCGCAGGCACCCGCCGCCGCATCCCCGCCGACTTCGACGGCCTTACCCTGATCCGCATGACCGCCGCACCGAAGGTAAAGAACATGCAAACCCCCTCCTAAAGCGCAGGTCAGAAAGA # Right flank : GGTTGAGCTGTACGGGGCAACTGACCGCGGAGACGCCCTCCCCGCTCCAAACCGGTCAGCTCGCATCAGTCACTCAGCGCGTCCGCCTATTGGTAGGCCGGGAACACGCTGCCACCGGGAACTGCTCTCGGCGACGGCTTCCCTGGGGAGAATCTGGGGAGTATCCGCGTCGCTGGGGAGCGCGTGGGGAGAATCGTCCGCACAAGACTGCATGTTCGTGAAAGACGCTGAAAGGCACAACTCCCCAGGTCAGCGGCAGGCACGGTGGAATCACCGCAGGTCAGCTCCCTTAACTGAACAACTTCATGCCGAAGGTTCCCTGCAGCGTGGGTCGGGTGGTGAACCGCATGTCTCACCTCGGTGGTCGGGCGGGCCGGCTGCTCCGCCCGCCTCCCGCGCGCGTTCCGGCGAGCGGGCTCGGCAAGGGGCCGGGGTCGGCCGGGCTCCGGTCGGCTTGATCAGCGACAGGCTACCGACCGGGTCCGGGCGCGCCGCGCCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22510-22319 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYCT01000042.1 Streptomyces sp. PRKS01-65 NODE_42_length_32454_cov_69.4091, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 22509 29 93.1 48 .CG.......................... GCCCCGGGCAGCGAGGGGCCGGCCGGCCGCGCCGGGAGGTGAGGAGCC A [22502] 22431 29 100.0 55 ............................. GCTAGCCGCGCCGGGCGGTGAAGAACCGGTCGGCCGCGCCGGACGGTGAGAAACC 22347 29 82.8 0 GAC.......CT................. | ========== ====== ====== ====== ============================= ======================================================= ================== 3 29 92.0 52 AGTCGGCCGCGCCGGGCGGCGAGGAACCG # Left flank : TGCGGGAGACGTACTCCTGCGGAAACCTCACGGACGTGCCCCAGGCGAGCTTCCCGCTTCTCAACTCCCCGGCCAGCCGGGCGAAAAGCCGGTCCGCGTGCCCCTCCCAGCGACTGGCGTCGCGGCTCAGCGCCAGGGACAGCCGCGCGGGCGTCAGGAAACGGGCCAGCGGATCCCTCATGTCGGCACCGTTCACGCCGTCCCCGAAGAACATGGCGGCGTTCCAGACGAGCCTGACCACCAGCTCGATGGGGATCAGCAACCACTGGAAGACGAACCACGCCAGAACGCCCGACCTGGCGGGCGGCCGCGGGGCCCCGTCGAAAGCAGGTGACTTCATCGGTCCGTTTCCCTGTTCTCCACTCGGCTCAGTACTCCACGCAGGGACAACTGTGCCACGCGGACGGGAAGGCCAGGGGCCACCGGTCCCGGCGGGTGACGTCCGTACCGTCTCGGTGCCGGACCGCCGGGCACGGCCCGGCAGCCCAGGGACGGGCTCG # Right flank : GTCGGCCCGTGGGGGCCGAGCGCCGGTGCCATGGTGGGTGCTTCGCTCCCGCCCTCCTCCAGCCGAAGGGCTTCCCCCGGCCTGAGGGGGGGAGGACGGCGAGGTCCGATTCCACCGGCCGCGCCCGGCCGGCGGCACGCACGGCATCTCCTCACTCGCAGCCCGGTGCGACCAGCAGGACTCCGGTGACCGCGGCCTTCTCCCCCATGACCGTCCCCTGACCGGCAACCCGGCGGGGGACGGTCATGTACTTGCATTACCCCGCGTCTGCAACTATCGTCGTCCACAACAAAGCGCGTCTGCAATTATTTGGGACGCGCGTCCGGCTTCGCGGGGCGCGGCCGTGCACCGAGCGCCGCGGCCCTGCCGGCGGAGCCGGAGCCCACCGAGGCGCCTGTCCACCGCCGACGGCGCCCCGTCCGGCCCGCGTCGGGGTACCCCCCGACGACGAGAATCGACCGAAAAGGCACCACCATGTCACTGAAGAACCTCCTTCCCGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:-0.69, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCGGCCGCGCCGGGCGGCGAGGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCACGGGCGGGGATGAACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10454-12004 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYCT01000074.1 Streptomyces sp. PRKS01-65 NODE_74_length_26317_cov_65.3588, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10454 29 100.0 32 ............................. CCTCTCGAGCCGGGCACCGTCCGCTCGTCCAG 10515 29 100.0 32 ............................. ATCATGACGGCCATCTCGCGCTCTGCCCCGCG 10576 29 100.0 32 ............................. AAGGCGGAGTCGTAGAGCATCTTGCCGTGGTC 10637 29 100.0 32 ............................. GTGCCGCTGCCGCTGACCGCCCAGCAGCGCGA 10698 29 100.0 32 ............................. CTCACCGATAAGATGGCCAAGGGCTCCACGAA 10759 29 96.6 32 .C........................... GCACGCACGCACAGCGCGGAGCGCATCCGCAC 10820 29 100.0 32 ............................. CCGGCGCACAGCCTGGACGACGTCGGGCACGA 10881 29 96.6 32 ........................G.... CATCCCCTCCCTCATCACGGAACGGGTGTACA 10942 28 93.1 32 ......................-.G.... CGGACCGGCTTCGCGCCGCATACGTGGCTGCG 11002 29 89.7 32 ..............T.........G..T. CGGCCCAGGCTGTCGTACATGTTCATGAAGCC 11063 29 96.6 32 ........................G.... CATGGCGGGATTCGTACGCGGCGCGCGACCTC 11124 29 93.1 32 .........A..............G.... CACCTAGGAGAAGGGGGCGCCCTGGCCCGTGA 11185 29 93.1 33 ........................G...A GCGGGGAAAGTCCGAGGAATGCCGACCGATCGG 11247 29 96.6 32 ........................G.... CTTGCCTTCCTGCCCGCGCAGGGTGACGCCCT 11308 29 93.1 32 ...............A........G.... CGCACCGTGTGGCCTCCGGCGCCGTTGTTGAC 11369 29 96.6 32 ........................G.... ATGCCGGGCGGATGGGGGAACGTCGCGCCGCG 11430 29 93.1 32 .......................AG.... CGGGACGCGCTGCTGCTGGACATCATGGGCGC 11491 29 100.0 32 ............................. AAGAAGGCCCAGGCGGAGGTCGACGCGCGAAC 11552 29 100.0 32 ............................. TTCATGCTGGCGGGGGAGGAGCGGTGGCAGGC 11613 29 93.1 32 ..............G..A........... CCAACAGCGGCCACGACGGACGCTGCCGGCAC 11674 29 100.0 30 ............................. GTCGAGGATCTCGGGCTTCGACCTGCTGAT 11733 28 96.6 32 .................-........... TTGTGTTCAAAGTGGCGCACAGGAAAGGGGGC 11793 29 96.6 32 .....................C....... CCGCCGCCCACGCTGGAGCTGCTCCAGCTCGA 11854 29 96.6 32 ...........T................. AACGGGTCGCCGATGTACGGCGCGACATCGTA 11915 29 96.6 32 ..........................T.. CCTGGCGAACGTCTCCGCATCCGCGGCCGTGG 11976 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 96.8 32 GTCCTCCCCGCCGACGCGGGGGTGATCCG # Left flank : GGACGTCCAGACCCTGTTGGCCCCGCCCCACGCCGACACCACCACAGCCGACGACGACACCGACGAGGAACACTCCGAACGGCGTGACGTGAAAATGGTCCACCTCTGGGACCCCAAAACCGGAGCGCTCCCAGCAGGCGTCAACTACGCCGACGGAGGCGACTGATGCCCTCCATGGTCGTCATCCCCACCACCGCGGTCCCCGACCACCTGCGCGGCGCCCTCAGCCGATGGACCAGCGAGGTAGTACCCGGCATCTTCGTCGGCAGCCTCTCCGCCCGCGTCCGCGACGAACTCTGGCACGCCGTCACCGAAATCGTGGGCAACGGCGCCGCCGTCCTCGTCCACCCCGCCGCCACCGAACAGGGATACACCATCCGCACCGCAGGCACCCGCCGCCGCATCCCCGCCGACTTCGACGGCCTTACCCTGATCCGCATGACCGCCGCACCGAAAGTAAAGAAGATGCAAACCCCCTCTTAAAGTGCAGGTCAGAAAGA # Right flank : GCGATCCGGTGAAGGGCTACGGCCGGGAATCCGGAGATGATCCTCGCCGCCGTCCTGGCGGCGGCGGACGCCGACGACGACATCGACTGGACGGTGTCGGTGGACTCCACGGTCATCCGGGCCCACCAGCACGCTGCCGAAGCGCTCAAAAGGGGACGCCCTCCCGCGGCGAGCCCGCCGATCACGCGCTCGGACGCTCCCGCGGCGGGCTGAGCACCAAGGTCCACCTGGCCGCTGACGGCCGCGCGCGGCCCCTCGCCTTCACCGTCAGCCCGCCGACGCGGGGGTGGTCCGGTTGAGCTGTACGGGGCAACTGACCGCGGAGACGCCCTCTCTCGGCGACGGCTTCCCTGGGGAGAATCTGGGGAGTATCCGCGTCGCTGGGGAGCGCGTGGGGAGAATCGTCCGCACAAGACTGCACGTTCGTGAAAGACGCTGAAAGGCACAAATCCCCAGGTCAGCGGCAGGCACGGTGGAATCACCACACGTCAGCTCCCTTA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14058-14696 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYCT01000074.1 Streptomyces sp. PRKS01-65 NODE_74_length_26317_cov_65.3588, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14058 29 96.6 32 ............G................ CCGTGCTTCCGGATTCCGTGCCCGGACCCGGT 14119 29 93.1 32 .C..........G................ GCACTACCTTCCGCGGCTACGCCACCGCCGTC 14180 29 96.6 31 ............G................ CCGTCGGCGATGAGCCACTCGGCGATCGCGG 14240 29 93.1 32 ............G...............C TCGGCGAGCTGCGCCTCGGTCATCTCGCTGAC 14301 29 100.0 32 ............................. CCACGCCCGCTCGAGGGCGGGGTGTGGGAGTG 14362 29 100.0 32 ............................. TCGGTACGCCCGATCGGCGACGCGCGGTGCAG 14423 29 100.0 32 ............................. TGCGGGAGGAGACCGGCCAGCGCCTCGACGGC 14484 29 100.0 32 ............................. GCGGTCCGGGCCATTCCAGCTGGCTCCGTACC 14545 29 93.1 32 ............G........A....... AAGTCGGCAGTGGCGTCGACCGCCGGGCGGCT 14606 29 96.6 32 ............G................ GTCATCCCGGTGTACGCCCACCCCCGTGTCGT 14667 29 79.3 0 ............G...........TGGTC | A [14684] ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.3 32 GTCCTCCCCGCCAACGCGGGGGTGCTCCG # Left flank : CCCTGGCCGGTGCCACCTTGGCGGGATGCGTCCAACGGTCCGTTCCCGCCCGAGGTATAGGCAGCGCTGGAAGCCGCCGGGGCCGATGCCGCGACGCCCACACCGCGCCCCGCATTACGGGATCCGCGTACGTACACGCCCGCTGAGAGGGGGCCGGTGGCAGAACCCGTCTCCGCCGCAAACCCGCGCCGCGTCCACCGACACGGCCTCCCGGCACGCTCACCCCGTCACAGTTACGGCCAAGAGGCTGCGCCTGCCAGCCTGGCAAACGCCCGCATCCGGCACCGGCACGAGCGAACCCACCACGATCACCGTCCCGAAGCACGACCTCCTTGGCAACCCGCCCAAGTGCGACACCGCGCTCAACCACTCCCCGCTGCCAGCACTACCGCCATCCAGCCCCGGTAGGCTGACATCATGCGGCCGCACCCACCCCGAACCGGCACCTCCTTGCGGGCAGAGAGAAGACAAAACCCCTCTTAAATGCCAGGTCAGAAAGG # Right flank : CGCCTAATTTAGCCTGGCGGGGGAAGTCGAGCGGTCCTCCGGTGGCCGTGTCGCCGCCGAGGTCGGCGAGGGCGGGGCAGCCCAGGACGGTGACGTCGTCGTGTTGAGCGGGGCGCTCGGGCTTGCGGGTGTAGCCGCTGCCCAGGTCGCTCTCGTCGAGCAGCCGGGCCGTGAGCGCGGCCGACGACAGAGCAGTGCCGTTCTGCTCGGTGGCGGCCGGGCTGCCGGAACGCGCGGAGGATGACGCAGTCGGACGTGCCGTGTCGGTGGCGAGGAGCAGGCGGACAGGGTGAGGAGGGCGACGGCGGTGAAGCCGACAGCGGTGATGGCGACGCGAACGCGCATGACGTGACCCCTTGGTACTGGGAGACGGTTGGGCAGCGCGGGCCCGTGGGCCCGGTGGGGTCGTAGGGGTAGGAGTCAGTGGCCGAGGTGCCGCGGACAGTCCTCGAACGTCGCGTGCGTGGAATCTGCCGGCCCGGAGTGCCGGTTGTACCAGG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCAACGCGGGGGTGCTCCG # Alternate repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 26220-24727 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYCT01000074.1 Streptomyces sp. PRKS01-65 NODE_74_length_26317_cov_65.3588, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26219 29 100.0 32 ............................. AAGACGGCGCAGGCGGCGAGGAGCAGGCCGGC 26158 29 100.0 32 ............................. CTCGGCGACCAGCCCGTGCAGACCGGCGCCGT 26097 29 100.0 32 ............................. GAAGCGCAGGCCGCCCGGCAGGCCCTCCTCAC 26036 29 100.0 32 ............................. CTGAAGGCCGCATCGAAGGCCACCACCGTCTG 25975 29 100.0 32 ............................. GCGGGGCGGTGTTGCCGACAACGCCCGGATGC 25914 29 100.0 32 ............................. ATGGAGGGCTTGACGCTCACGCGCCCCGGGAA 25853 29 100.0 32 ............................. CGGTGGCACGCCCAACGACCCACCGCCCTGAT 25792 29 100.0 32 ............................. CCGGGGCAGCCGATAAGCCGCACCTGGACGTC 25731 29 96.6 32 ....C........................ TCGCAGGTGTACGTGCCGAGCGTCGTGAGCTG 25670 29 100.0 32 ............................. CCGCCCTCGACCTCATCGGCCGCGGCGGAATC 25609 29 100.0 32 ............................. GAGCTGTCCGCGTAGGGGAGCACGCTGCCCGA 25548 29 100.0 32 ............................. TGGAGGCCGGCGGTGTCGATGCGGCCCCAGTA 25487 29 100.0 32 ............................. TCGCCGGAGGAGCTGTTCCGGCTGGCCATGGC 25426 29 100.0 32 ............................. GCTCAGGACGGGAAGGCGCGGTTCGAGCGGTG 25365 29 100.0 32 ............................. ATCATCGACTTGTACGCCCGGATCATGTCGTC 25304 29 100.0 32 ............................. ACCATCGACCGCGAGGCGGCGAGGATCGCGCG 25243 29 96.6 33 ............................A ACCTGCCCCAGCGCTGGCGCGATCTGCCCGACC 25181 29 93.1 32 .C..................A........ GTCGAGCGCGAGCACAAGCCATGGTCGCTGAT 25120 29 100.0 32 ............................. ATCTTCGACCGGCCCGGGGTGTGCGAGTTCGA 25059 29 100.0 32 ............................. CTCGCCGAGTGGGTCGGTAAGGGCATCGGCGC 24998 29 100.0 32 ............................. CGGGCAGGCCGTGTTCTTCGCTGGCGGATCTG 24937 29 100.0 32 ............................. ATCGAGGAGCGCGTCACCGTCCAGCAGTCCGC 24876 29 100.0 32 ............................. CCGACGCCGCCGGCGAGCTGCCGCCAGCCGGT 24815 28 93.1 32 ......T.-.................... CGGTACTGATCTCCGCCGGGGTCCAGGTCGAC 24755 29 93.1 0 ........................C...C | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.9 32 GTCCTCCCCGCCGACGCGGGGGTGATCCG # Left flank : CGATAAGGTGACGACATGCAGTCCTGTAGGTCACGCCACAGCGTCCCCCGCAATGCAAAGAAAGTGCAAAGCCTTTCTTGAGGTGCAGGTCAGAAAG # Right flank : GGAGATTGCCAAGCGGGGATGGATCGGGGCTGCGGCCTCCACATCGACAAGGGACCGAGCGTCAGCCCTTGACAGTGCGCTGCGAGACTTGAACCGGCCAAGCGCTTAGAAGGCGCCTGCTCTATCCACTGAGCTACGGGGACTGACCTGCGGAAAGGCAGTATCCCAGGTGCTTGCCCATGGGGTCTGTGGGACGTATGTGGGATCTTCCAGCTTCCTGGAACGGTGGGACCTGTGTGTCCCGGTGGCCCGGACGTAGGGTCTCACACCATCTTCACAGGGCCGAAGCCCTCCGCGGAAACAATCCCAGGCCCGCCCGGCGTTGACGATCTCCGAACCGAGGAGGGGAAGGTGTCGGGCCTGAAGCTGTACCACACGACGACGAGCGGCGCGATCGAGGTCGCGCCGCGTCTCGCCGAGACCGAGGCAGACGTGCAAGGCATGGTCGAGGCCCACATGGAGACGCTGCTGGGCGTCCGGTTCCTGGCGAGCGAGTACAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //