Array 1 46-1155 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOH01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 89-0213 SEEH0213_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 46 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 168 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 229 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC A [252] 291 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 352 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 413 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 474 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 535 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 596 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 699 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 760 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 821 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 882 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 943 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1004 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1065 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1126 29 96.6 0 A............................ | A [1153] ========== ====== ====== ====== ============================= ========================================================================== ================== 18 29 99.2 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGGATAAACCGCCGCTGACGCACTGGATCAACCTGACGCAACGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 313928-315053 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOH01000011.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 89-0213 SEEH0213_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 313928 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 313989 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 314050 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 314111 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 314172 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 314233 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 314294 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 314355 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 314416 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 314477 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 314538 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 314599 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 314660 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 314721 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 314782 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 314843 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 314904 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 314965 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 315026 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 331312-331590 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOH01000011.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 89-0213 SEEH0213_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 331312 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 331373 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 331434 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 331495 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 331562 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 100.0 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : CCTTTAATCGCCTCTTATCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //