Array 1 13955-15484 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWC01000094.1 Pseudomonas aeruginosa isolate E, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13955 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 14015 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 14075 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 14135 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 14195 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 14255 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 14316 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 14376 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 14436 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 14496 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 14556 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 14616 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 14676 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 14736 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 14796 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 14856 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 14916 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 14976 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 15036 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 15096 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 15156 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 15216 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 15276 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 15336 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 15396 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 15457 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 25647-24358 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWC01000094.1 Pseudomonas aeruginosa isolate E, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25646 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 25586 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 25527 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 25467 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 25407 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 25347 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 25287 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 25227 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 25166 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 25106 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 25046 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 24986 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 24926 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 24866 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 24806 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 24745 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 24685 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 24625 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 24565 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 24505 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 24445 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 24385 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //