Array 1 1636809-1636361 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBXO01000001.1 Saccharothrix australiensis strain DSM 43800 Ga0197483_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================== ================== 1636808 29 72.4 83 ....G..GG....CGT....T.C...... AAGCGGGCAACGGCCCGTTACGAGACTGGGCTGAACCGAATGAAAACCAGGGCAAGCGTGGGTATAGTCCCAGGTCACGAAGT T [1636784] 1636695 29 100.0 32 ............................. CGTCTGGCAAGGACCTGTCGAGTTGGACGCCG 1636634 29 100.0 33 ............................. CGGTAGGCGGCGTACGGATCGTCGTCCGCGCGC 1636572 29 96.6 32 ............................C GACGCGTGCGACAGTTAACGCCCCGGTAACCT 1636511 29 96.6 32 ............................C CAGCCGCCGCGGTCGGCCGCCGACACCGCGCC 1636450 29 96.6 32 .................T........... GCCAAGGTGCTCATCGGCACGGCATCCTCCGT 1636389 29 93.1 0 ..........................T.C | ========== ====== ====== ====== ============================= =================================================================================== ================== 7 29 93.6 41 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GTCTACCTCGAACACGGCGAGCTTCCAGCATCCACTACTCCGTAGTCGATCGCTCGCCCCGTCCGCGAACCGTCGCGGCGCTCGTGTTCAGAGTTCCTTTTCTTCATCAAGGCGGCCCCTGCCGGGGCCGCTCGCGCCGCTCCGCCCGAGGCCGCTCGGCAAGGGCGCGGGGCCCGCCTCCGGCACCCACGCCCGCCGACGGCCGGAGACACGCGCGGCCCCGGCAGCCGCCGCAGGTTCAAAGATCAAAAGATGCGCTCGCCGCGCGGCAGGCCAACAGGATGACCGGTGTCCGCGGCTGCTTCCGGACCCGGCGGGGACCGGGGCAACGTGTCATCCCGACGACCTCCCGAAGGGCTATCACGCGAGCTGGGGCCTGCGAGCCTGGCACCGCACTCGCCGGTCGATCGGGCATGTCGCAGGCCCCCAGCTCGCGTGACAGGGCTGCGCCAGGTCGACGGGATGACACAAAGCCCCTCGTATGACGAAGATCAGCGGTG # Right flank : AGCGACCAGAACGTGCTGTCCTACCTGCCCGACGTCTTACCCACGCGAGCCGGGACAAGATCAACTCTCTGCTTTTGCCCCACAAAACCATGACAAGCGACTGCGAAGGACGATCCACAGTGGTCATTCGCGAATGCTAAGAGTGCTGCTGGCGGTAGGCCCTGGCAGAGATCGGCAGATCATGAAGACCTCCGCCAACAATCTGTCAGGTCATGGACAGGGACCAAGATGGCCTCCATGCCTTACCCCTGCGAAACGACGGCAGATGACCGCTGTGGACGCTTAACGACACTTAACCAGCGGAGACCATCAGCGCAGGTGAGGAGCGGTGTCCTGCGATCACAGCGGACGATGACAGGTGTCTCGCTCTAATCCCGAGGCCGCAGGTTCGAATCCTGCCGGGGGCGCTGGATCAGCAGGCCCCCTGGCCTGCACGTACCGGTCAGGGGGACAAGCGGGTCGATCTTCGATCGTTCATGCTGGAGCCGACGGAGTCCCAC # Questionable array : NO Score: 4.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.69, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1832918-1832644 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBXO01000001.1 Saccharothrix australiensis strain DSM 43800 Ga0197483_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1832917 30 96.7 31 ............................G. CACGGTCGTGCAGCTCCCGGTCCCGCCGAAG 1832856 30 100.0 31 .............................. AGGTGGCTGTGCTCATCGAAGTCACCTTCGG 1832795 30 93.3 31 ............................AT CCCGCCCGGCGACTCCACTGTGGCCCTGACG 1832734 30 90.0 31 ...............A........T....G GCGGCACGGTGACCCGCACCGCTGGCGGCAA 1832673 29 86.7 0 ....-......................GTG | G [1832648] ========== ====== ====== ====== ============================== =============================== ================== 5 30 93.3 31 GTCTTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : GCATGGCCGGCTGCTGCTGTCCCGTCTGGCTGGGCGCCGGCAGGGCGGAACGGCGTCGGCTGGCGTGACCTACGGCTTGGTCCTCCAGCTCGTAGCGTCCCCAGAGTGCGAGTTGTCCGGGGCTGTTGATCCTGGTGCCGCGCATTGCCGCCTCCTAACCGCCTGTCGACAACGGGTCCGGTGGTGTTGGTGGGCTTGTCGCCCCCTGTCCCCCGGCCCTTGCCGCGGTTAGCGTCGGGTCGACGGTGTCAAGGGTGGCCGCAGGCCATCGCGCAGCGACGCGCAGCGCCCTTGATGCCGTCGGCGCGGTGTTAAAAAATCCCAGGGCCTCCGTGGGGACAGCCCGCGCAAGCTGTTCGTGTTCGCCGGCAGGTCGGCCGTCCGCACGGCGAGTTCGTCATCGGCGGGGTGGAGGGTGGTCCCGGTACACGTGATTTCGAAACTGGGATGCACCGAATGAAAACGGGTGGAGGCTGGTCTAAAGTCGCTGGTGGCGAAGT # Right flank : AGCGTGCGTCATCTGTTCGTGGACGGGTTCTTGTCGCCGTCGTGGGTGGTCCGTCTGCGGTGGCGTGCTGGACCTAGCCGCGTGCATCGACTCCGCGCGCGGCCGCCGGGCGGAGCGGAGCGGGAGCCCGGCGGGCCGCGATGCGGGGAGTCGGTGCCAACGTGAGTCGGTGACTGCGTGACGCGACTGCCCAGCGCGCCGCCGCCGGCGGCGCGCCTTGATCCCATAAAGCTGAATTCGTCAGTGCACGCGGTGAGTGCCGTGTGGTGGGATTGCGGGTACGCCATACGCTGTCGGCGTGGAGCTTGTGGCTTGGGCCTACTCGGTGGCCGGCGAGCTGTTGCAGGACGTGGTGCCTCGGCGGTGGGTGCATGTGCGGGCTGTTGCGGAGCGGGCTCGGCGGGCCGGTGGGTTGTTCGAGGGTGATGACCTCGATGTGTTGGTTGCCTCCGCGGTGTTGCACGACGTTGGTTACGCGCCTGCGATCGCGCGGACCGGGT # Questionable array : NO Score: 3.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2800310-2799367 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBXO01000001.1 Saccharothrix australiensis strain DSM 43800 Ga0197483_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2800309 29 100.0 32 ............................. CCGTCGAAGCCCTCCACGTTGACCGTCCACGA 2800248 29 100.0 33 ............................. TGGGTGAGGTACCACGGGCCGAATCCGCATACG 2800186 29 96.6 32 ............................T GGAACGTTGGTTACGCTCATGATCCCCAACGG 2800125 29 96.6 32 ............................T CCCGAGCTGGGCAACCAGGAGCTGGCCGACCT 2800064 29 100.0 32 ............................. ATCACCCACGTCGACGTGGCCCTCCTGGCGGG 2800003 29 100.0 32 ............................. ATCGCGTTCCGGGACGAACACGATCCGATCCG 2799942 29 96.6 32 ............................T CGCAGACGTGGAAGCAGAAGCTCGCGCCCTAC 2799881 29 96.6 32 ............................C AGGACGCGGACATCGTCATCCTGATCCACAGG G [2799859] 2799819 29 96.6 32 ............................C GGGGCGTGCCCGCGCTCGATCAGCAGCACGTG 2799758 29 100.0 32 ............................. CGGACCTCAACATGCCGCCCGCTCGGCGCGCC 2799697 29 96.6 32 ............................C AAGCGGCCGACGGTGTATGACCTGCTCATCCC 2799636 29 96.6 32 ............................T CACCGACCTGCGGGTTCCGGGCCTGCTCGCGC 2799575 29 100.0 32 ............................. TTGGGTGAGGTGCTGCTCGTGCGCGCCGAGGT 2799514 29 100.0 32 ............................. CTCACACCGATGACCGACCACCCGCCCGTCAC 2799453 29 86.2 31 ...........A............AC..T GGGTGGGAGAGCGTCTTTCACACGCGGCCGA 2799393 27 86.2 0 .......G.............-...-..T | ========== ====== ====== ====== ============================= ================================= ================== 16 29 96.8 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : TCGCGCCGTGCACCGAGCTGATGTCTTCCCTGCGCGAGCGGGGTTGGTCCGACTACGTCCTCGTCATTCCGCGTGCGCACGTCGCTCTCCCCGTGGGGGCAGGGATGGTCCCTGTCGAGCAGTTCGTCACCTGCGGACGCGCAATCTTCCCCCCGCGAGCGGGTGGTCCCCCGTTGCCGCAGTTGCTCTCGATCGCAGGCCAGCGAGACGGGCTACGACCTGCCCGACTGCGGCCCGGCCGGGCGACCCGACCCGATGAGCGCGGACGGCGGCCGGGGTCGGAGCGGGGTAGTCCCCGTGATCCCGCACCCCGGCCGCCCGCCCGGTGACCTCGCCGGATCGAGGCGCGCGGCGGGTGGGATCGCCCCACTTGCGTGTCAGTCGCGTTTAGGGCGGCCGTACCTCGCCCGGCCGCCCTTCGTGGTGCCGCACCATTACGACACTGCGACGAACCGAATGAAAACCCACGGGTAACACGATAAACTCGCAGGTCAATAAGT # Right flank : CGACAGCTGTGGCCCGAGGTGGGTGCCTCGGGCCACCGGTTCAAGAAAAGTTGCTCAGCCGCGCTTCAGGCGCTCCGCCACCTGGTACACCGACTGCCACAACGCGGTGGCCGCGTCACCCAGCAGAGATCCCCCGGACGGGGTACCTCTGGTGATGTCCAAGCCGGCGTCGTCGGACACCACGTCCTGCGCCAGCAGCTTCTCCAGCACCGCCAGCACGACGTCCGGGTGCCCCAACGGCAGCGGCGCGGCGAAAGTCTGAACAGAACGCACCTGGTCGCGGTGCCGGTTCGCCAAGTCGCCGACGCCCGACCCGGCCGCCGCCCCCGCCACCACGTGCACGTCGCGGCCCCGCAGGTCCGCCAGCACCGCCTCGGCCTCGCGCAGCGAATCGTCGGCCACCGGCAGGCGGCACCACGCCACCCTCAGGTGCTCGGTCAGCGGCCGCCACGTCGCGGGCAGCTCGCCGTGCGGTGCCGCGCCCGCCGGGTCCAGGACGA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2803227-2801608 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBXO01000001.1 Saccharothrix australiensis strain DSM 43800 Ga0197483_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 2803226 29 96.6 32 ............................C CTGCGCAGACTCTTTGCGGAGGTTGGACACGG 2803165 29 100.0 32 ............................. GAGGAGCGCGCGATGGCATGGTGCCCGTTCGC 2803104 29 100.0 32 ............................. CGGGCCAGCTCGGCGCGCAGGGCGGCGATCGT 2803043 29 100.0 32 ............................. CGGGCGTGGCGGTCGAGGTCGGCGAACGCGGC 2802982 29 96.6 32 ............................C TGGCCGAGCCTGCGGAGTCGGTCGACCAGCCA 2802921 29 96.6 29 ............................T CCGCGCGGGATGCGCCGAAATCACGCGCG 2802863 29 100.0 32 ............................. CGGTGGGCGTGCCCGGACCGGCCGGCGGGGAT 2802802 29 100.0 32 ............................. GATCCGATTTCCGCGCTTGTAGCAGTCGAGCA 2802741 29 96.6 32 ............................T TTTCACAACACCACGGCGGGCAGGACGTACAG 2802680 29 93.1 32 .......................A....C GTCACGGAGCCGTTCCGGCCGGTCGTGCGGTA 2802619 29 100.0 31 ............................. ACACCCGGCGCGTAGCACCACTCCCACCCGG 2802559 29 100.0 32 ............................. GCCCCCACCGATGTCGCCGCGCCGCAGAGACG 2802498 29 96.6 32 ............................C GCGATGGCGTAGTCGGCCGGGACCAACGGCTT 2802437 29 100.0 41 ............................. TACCGCCCCGCCAACTCCGGCGGCAACACCCCGTCTTCCCC 2802367 29 96.6 33 ..............G.............. GCGGCGCGCAGCACCGGCTGCACGCGCACTCCG 2802305 29 96.6 33 ...................A......... CGAAACCGCCCCACAGCGCCAGGTCCGCCCGGC 2802243 29 93.1 32 .........................C..C AGGCGGCACAGCAGCACCGCCTGCCCGAGGGG 2802182 29 93.1 32 .........A..................C CCGCCAGCCGAGACGGTAGTGCGCGTAGCCCG 2802121 28 93.1 32 ........-...................T TCCGGGTGGAGACGCCGGACGGTTCCATTTCC 2802061 29 96.6 33 ............................C GAGCCGCTGCGATGGCCGAACCCACCCCCGAAG 2801999 29 93.1 28 .........................G.T. GCTCGCGTCGGCGCTGTCGGTGAGCGCG CC [2801974] 2801940 29 100.0 32 ............................. TAGCACGCCGAGCAGGTTGTCGGTGCCCATCA 2801879 29 75.9 33 ...G..T.T.T........A.A......C TAGCGCACCGCCGCGCCGGGCGGCGGCCACCTG 2801817 28 86.2 32 ..............G.......A.-...C CGTTCGAGGTTCAGAACGCCAAGCCGGATGCC 2801757 29 93.1 32 ...G......................T.. GAGTATCAGCACCGGGTGCTGGCGGCCTGGAA 2801696 29 89.7 32 ...G...............A........C GCCTTAGAGTTCGCGTTAAGCGACCTCCGCCG 2801635 28 86.2 0 ............T........-.A....C | ========== ====== ====== ====== ============================= ========================================= ================== 27 29 95.2 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : AGGGCGACGCGGGTGCACCTCCAGATGGAGTTCGACCCGCAGACGTTCACCGAGAAGGCCGGTGCGGCGCTGGGCGTCGTGGAGCACCGCGTCTCCGGCGACCTGGACCGGTTCAAGAAGTTCATCGAGCAGCGCGGCAGCGAGACCGGCGGCTGGAGGGGCGACGTGAGCCGCCCGCCGCAGGCCGGCGAGACGCGCCACGACCTGCCCGACGGCGGCCGGCCTGGCGACCCGATCCGATGAGCGCGACCGGCGGCCGGGGCCGGAGCGGGATGGTCCCCGCGATCCCGCACCCCCGGCCACCCGCCCGGTGACCTCACCGGATCGAGACACACAGCGGGTGGGGCCAGCCCACTTGCGTGCCAGCCGCGTTGAGGGCGGCCGGACCACGTCCGGCCGCCCTTCGCCGTGTTCTGGTACACCGTGCCGCAGCTTTACGAGACTGCCGTGAACCGAATGAAAACCCACGGGTAACACGATAAACTCGCAGGTCAATAAGT # Right flank : CCGTTGCCGCAGTTGCTGTCGATCTCAGGCCGGCGAGACGCGCCACGACCTCCCCGACGGCGGCCCGGCCGGGCGACCCGACCCGATGAGCGCGACCGGCGGCCGGGGCCGGAGCGGGATGGTCCCCGCGATCCCGCACCCCCGGCCACCCGCCCGGTGACCTCACCGGATCGAGACACACAGCGGGTGGGGCCAGCCCACTTGCGTGCCAGCCGCGTTGAGGGCGGCCGGACCACGTCCGGCCGCCCTTCGCCGTGTGCCAGCGCGTCCTGCCGCTCCATTACGACACTGCGACGCACCGAGTGAAAACCACCGTGCGACGAGGTAACCTCGCAGGTCAATAAGTGTCTTCCCCGCGCGGGCGGGGGTGGTTCGTCAAGCTCCTCGGCGTGGTCGACCTCGAACCTGTCTTCCCCGCGCGGGCGGGGGTGGTTCGCACCCTGAGGTTGAGCTGTCCATCGACCCGAGGTCTTCCCCGCGCGGGCGGGGGTGGTCCGCGC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2953275-2953715 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBXO01000001.1 Saccharothrix australiensis strain DSM 43800 Ga0197483_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================================================================== ================== 2953275 24 75.0 90 ..........G.C...A.A.C..C GGCCGCCGACGTCGCGGTGGCGCGGCCGAAACCCCCGCTGACGCGGGGAAGGTAGCGACTCGCGCACCCTGTCGGTGAGCGGCCAGACCA 2953389 24 100.0 36 ........................ GATCTCGGCGGTCACCGTATTGGCGGGGTAGGGCCG 2953449 24 70.8 34 ..G.........C...ACA...AG GCCGCGCTGGACGCCGGGGAGCCCCCGGTCGGGA 2953510 24 83.3 36 ............C.....A...AC TACCCCGACACCAACACCGTGGTGCTCGACGGACCA A [2953533] 2953571 24 79.2 37 ..T.........C.....A...GG CGTGTGGAAGGTGACCGGCCTCGGCAACGACGGACCA 2953632 23 79.2 36 ..-.........C.....A...GG ATGGTGTCGTGGGTGGGGGACTGCGTGGCCGGACTA T [2953654] 2953692 24 79.2 0 ....T.......C.....A...AC | ========== ====== ====== ====== ======================== ========================================================================================== ================== 7 24 81.0 45 CCCCCGCTCGCGTGGGGAGGACTT # Left flank : CGGAACCGGTGTGACGGACCGCGCCGACATCAACCCAAGGACTATGAAAGTTCGTGCTATGCGAGTCCGCGAACGATCCGCTGAACGAGCGAGACGTTCCTCGGTTAACAAGTCCGCCAATGGGCCAAGTGTCAAGACCGTCAAAGATCGACCCAAGAAGACTCTTTGATCACTTCCGTCGACTTGCCCTCCTGCGTTTCACGCGCTTCGAGTGGTGGTTGGCGTAGTCGGGGACGGCGGCACCAATCGAACCGACTTCAGCATGGCTAAATCGTCTGCTTGCTCGAGCATGGACGAATCATTCTCGGCCTACTGCATGACAGATCTCCGCGTCCTCGCCGCGCACTGCGGCCCGCCGATGCGGATGGCAGGTACATTGAACTCGAAGACTTCAGTGTCAACTAAAAAATCGCAGGTAGTTATTGCCTTGGTGCGGCCTAGCCTTACTCGAGTGGGGGGACATGCTGCCGCCTTCAGGGGTGTGCAGGTGGCGCGGACCA # Right flank : CTTGCTGACGTGCAAGTTTACGCGCGCGGTAGCCGTTTTCATTCAACTTCGTGGACTGTGCGTCAGAGTCGCCGGCCGGGGCGGTTCGGGCGACTCCCAGGTTTTGAGGCTGCGGTGGGATCGATGTCGGCACATGCCGGTGAGACTGCAATGGACGGAGGCCGAGGGGCGACGGGAAGGCCGGGTTATGATCCACACGGTGTACGCGCCTTGGAGCCGGCGCAGATGGGGTTCGCTCCCGCCAACAGGCAGGGACGATCAGTTGGTCGGCTGCAGCTCTCGGCCAGGGGCGTATCGGCCGCCTGCTGGTGGCGTGGAGCCGAAGAAAATGTTGATCATCCTCATGGCTGTGGCTGTTGTGTTCGGCGCGCCCGCCGGCACGAGGCTGACTGCTTTCGGCCCACGTGCGTCCCAGTCGTTGCCGCCGTACCTCCTGAACGGCCGACTTTCACCTCGGTCGGCAGCGGCGATGACTTTCGGATGGAGCGTCTTGCCGCCGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.16, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCCGCTCGCGTGGGGAGGACTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [28-51] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 6 4752043-4752559 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBXO01000001.1 Saccharothrix australiensis strain DSM 43800 Ga0197483_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4752043 28 100.0 34 ............................ CTTGCCGTTGGACACGATCTGGCCCTGGGCGCGC 4752105 28 100.0 33 ............................ CCGGCCGAGGTCGGCCATCTCCATGATCTCGCC 4752166 28 100.0 33 ............................ CGACGACCACCCGCCGACGCGTCCGTGCGGCGG 4752227 28 100.0 33 ............................ CCGGCCGAGGTCGGCCATCTCCATGATCTCGCC 4752288 28 100.0 33 ............................ GTGCTGGCCCCGGATGCCGCCCAGCGCGGCCAG 4752349 28 100.0 33 ............................ GCATTCTCGGTAAATGCGGCGGCGGTCTCCTCA 4752410 28 100.0 33 ............................ CAAACAACCCACCTCCGGTGGACGGCGCGCAGG 4752471 28 100.0 33 ............................ GGCCGGGGCCACCGATCGTGGAGACCGACCGAC 4752532 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 100.0 33 GTCTTCCCCGCGCGAGCGGGGATGGTCC # Left flank : ACCAGCAGGTGCTGGCGTCGGCGCTGCTGGAGCACGGGGCGCGGCTGTCGCGGCGGGGAGGCGACCGGGAGGCGGTCGACGCGACGGCGGAGGCGATCCACATCTACCGGGTGCTCAACGGCCTCGACCCGCACCGCTACGACGCGCAGCTGGCGGCGGCGCTGCGCCGGCACGCGGACCTGCTCGTGACGGGCGGCGACACGTCCGGCGCGGCACGGGCGCTGCGCGAGGCGCTGTCCCTACTGCGCCCTTTGGCCGAACGCCTGCCCGCCGTGTACCGGGCGCACGAAGAGGCGACCCTGGCCGGTTTGCGGGCACTGGACTGACACGGGAGTGCCTCGCACGGTCCAGCTTCCCAAAGGCTCACCGGAACCCCCACAACAGCTCGCCGATTCCTACCGCGCGACGCGCGGACCACCATGAGGCACCAACCATTACGACACCGCGATGAACCGAATCAAAATCGACCTACACCGCTGTAAACTTCCAGGTCAACAAGT # Right flank : CGTCCCGCCCGCCGACCGACGGGTGGCGGCTGTGTGCTGGGCGGTGTTCGGACACGGCGGCGCCGTGAGTGTCCACGGGAGCAGGGCGGGTGGTTCGCCTCAGTGTGGTCGTGCTCGCGACGTGCCGCGTGCGGCTGAGTAGAGGGCGGTCAGTTGCCCGGTTTGTCGTGGGTCGGGGTTCAGTCCGGCCAGGATCGTGTTGAATGTCTTGCGGTCCGGAATCGCTCTTCCCCGTGTTGATGAGTATCCAGTACCGGTGGGAGAAGCCGCAGAGCGCGGCGATCTGTTCCGGTGAGCGGGTGCCCTGCACCTGCATCAGGCACGTGCGGAACGCCTGCGCGGCATCCGATCCGTCCGGGCCACTGGTCGTGCCTGGCGGGTTGCGCGCGTCACCGCGCGCGACCGTCACCACGGTGAACAGGTTCTCGAACTCCAGCGGTGCCAGCGCGGTCAGCGCGCCGCCGATGAAACCGGGGCCTGGGCACAGTTCACCGGCGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 6915969-6915266 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBXO01000001.1 Saccharothrix australiensis strain DSM 43800 Ga0197483_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 6915968 30 100.0 31 .............................. CGTGACGAAACGGGACGCGCACCCCTCCCGC 6915907 30 96.7 31 .............................C TGCACTACGACATCCTCTTGGACGGTACGGA 6915846 30 96.7 31 .............................C CTGAAGTGTCGCTGCCTGTGGCGCTGGCGGT 6915785 30 96.7 31 .............................C ACGACGCGTAGGGGACGCGCCCGCCGGCGGG 6915724 30 93.3 31 ............................CA CTTCGACACCAATTCGACCCCCTGCAATTCG 6915663 30 93.3 32 ....................A.......C. CGATCAAGTTGACGACCTTGCGATGGTCCGTG 6915601 30 96.7 31 .............................T ACCGGTGCATGGAAGACCACGACCACAAGGC 6915540 30 96.7 31 ............................C. AGGCGTTCGCCGCCGCGAAGGCGGAGAAGCA 6915479 30 100.0 31 .............................. CGGAGGCACGGCTGCGGCGGTTGCACGTAGA 6915418 30 96.7 31 .............................A GCCATGGCGCGCTGATCGTCATGACCGAGAT 6915357 30 100.0 31 .............................. AGGAAAACCTCTCGAAGGAGGGCATGGAGAC 6915296 30 90.0 0 .........T....T...........T... | G [6915271] ========== ====== ====== ====== ============================== ================================ ================== 12 30 96.4 31 GTCTTCCCCGCGCACGCGGGGGTGGTCCGG # Left flank : GTGGTGATCGGCGTGGGCGGTCGGTGGGGGTGTTGGTTGGGTGTGCCGGCGGTTGGCGTGGCTGACGGCCTGGTCTTCCAGTCCGTAGCGTCCCCAGAGTGCGAGCTGTCCGGGCGTCCTGGTCCTGGTGCCTCGCATTGCTGCCTCCTGCTACCGCCGGCCGACAACGGGTCCGGTGAACTTCGGTGGGCTACTCGCCCCCTGTCCCTCGGCCCTTGCCGCAGTTAGCGCCGGGTCGGCGGTGTCAAGGGTGGCCGTAGGCCATCGCGCAGCGACGCGAAGCGCCCTTGATGCCGTCGGCCCGGTGCTAAAGAATCCCAGGGCCTCCGTGGGGACAGCCCGCTTGAGCCGTTCGTGTTGTTGGAAGTTCGGTCATCCAGGCGGCGGGTCCTTGCGGATGACCAGAGTGGCCAGGAGATGCTGCCGCGCTGCGATTTCGAGACCGAGGCGCACCGAATGAAAACGAGGCGATGCCGACACAACGCCCCTGGTCGGGAAGT # Right flank : GGCGTGTGGTGGTACGCAAGTTGGCGGGGCTTCGACGCAGGAACTGCGCCTGCGGTGGCGTGCTGGACCTGGCCGCGTGCATCGACTCCGCGCACGGCCGCCGGGCGGAGCGGAGCGGGGGGCCCGGCGGGGCCGTGATGCGGGGAGTCGGTGCCAACGCGAGTCGGTGCCGGCGCGACGTGACCGCCCAGCGCGCCGCCGCAGGCGGAGCGCCTTGATCCTCTAGAGCCAAGTTCGGCAGATGGTCATCCAGCCGGCCCGGTCAGCGAAGGTGCTTGCTGCGTCGGCGACGCCTTCGTGTCGGGTCGGGTTGGTAGCGCTTCAGAGCGCGGTTTGGACAAGTGAGAGCAGTGGGCGGGCGAGACCGCTGGTTGCTGCGATCGTGTGGCGGGAGGACGCGGTGTGGTCGTCTCCTGAGCTGTCCAGCACGAGTGCGCCGGCTTCCCTGGCGATGAGGATGCCTGCCGCGAGGTCGAGTGTCTTGTTCGACAGGATCACCG # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 7805037-7804825 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBXO01000001.1 Saccharothrix australiensis strain DSM 43800 Ga0197483_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7805036 29 100.0 32 ............................. GCGCATGGCCCACTGCGACGTGTGCTGTCTGC 7804975 29 100.0 32 ............................. CGCCCTACGTTCGTGATCAAGAACGAAACGCA 7804914 29 100.0 32 ............................. CCGCGCGGTGCCGCCGCGACGCGGATCGGAGC 7804853 29 69.0 0 ............T.......A.AAAGATC | ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.2 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : AGACCGGCACCCCGGTGTTGTGCGGCCCGCCCAAGGCCGCCTGGCGGCGTCCGGGCGTGCCGCACGAGGCATGGGCACCGGTCCCGCCGTCGGTGAGGAACGGCCAGCGGCCCCCGAAGGCGACCGCAAAAGACCCAAGATGCGCTCGCCGCGCGGCAGGCCAACAGGATGACCGGTGTCCGTGGCTGCTTCCGGACCCGGCGGGGACCGGGGCGACGTGTCATCCCGACGACCTCCCGAAGGGCTATCACGCGAGCCGGGGGCCTGCGAGCCTGGCGCCGCACCCGCCGGTCGGTCGGGCATGTCGCAGGCCCCCGGCTCGCGTGACAGGGCTGCGCCAGGTCGACGGGATGACACGAAGCCCCTCGTATGGAGAAGATCGGCGGTGGTCGGCCGGCATCGTCGGGTGCTTGTCTGAAGCGGGCATCGGCCAGTTTCGAGACTGGGCTGAACCGAATGAAAACCGGGGTAGGCGTGGGTATAGTCGCAGGTCACGAAGT # Right flank : AACGCCTCACTTTTGCCCCACAAAACTACGACAAGCGACCACGAAGGACGAACCACTGTGGTCATTCGCGAATGCTAAGAGCGCTGCTGATAGTAGGTCCTGGCATGGAACGGCAGGTCATAAGGGTGACCGCCAACAATCCGTCAGGTCATAAGTCGGCACAGTGCCAGGTGATCCGCCAAGGGGTGGTCGGGGCGTTCGGCTGACGCACCTGTGGACAGTTCGACGCCTTGGTGGCATCGGCCAGTCGACAGGCTTGCCCCAACATGGGGTGCAGGTATAGGTACTGTCGACCGCAACGGCCGCCACCGGCGACACTGCCAAGCCCTCAGTCGACGGGTGTGACTTCTGTCCGTGTGGACGCTTTTGGCGTTCAGTTTGCTGACAGTGTGATGCTCGACGCGAACACGTGTAACTGACAGTTGCCGGTTAGGCGCGTACAGCTATCTGCTAACGGATCGTTGGTTGGCTGCGATTACCGAGCCGATCGGAGGTATGCG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //