Array 1 186028-186666 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCST02000006.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0378 NODE_6_length_419534_cov_32.995484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186028 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 186089 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 186150 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 186211 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 186273 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 186334 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 186395 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 186456 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 186517 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 186578 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 186639 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 203418-206314 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCST02000006.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0378 NODE_6_length_419534_cov_32.995484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 203418 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 203479 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 203540 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 203601 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 203662 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 203723 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 203784 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 203845 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 203906 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 203967 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 204028 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 204089 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 204150 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 204211 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 204272 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 204333 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 204394 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 204455 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 204516 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 204577 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 204638 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 204699 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 204760 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 204821 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 204882 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 204943 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 205004 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 205065 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 205126 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 205187 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 205248 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 205309 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 205370 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 205431 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 205492 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 205553 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 205614 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 205675 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 205736 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 205797 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 205858 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 205919 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 205980 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 206041 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 206102 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 206163 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 206224 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 206285 29 96.6 0 ............T................ | A [206312] ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //