Array 1 207864-206994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHJ01000001.1 Pectobacterium carotovorum subsp. carotovorum strain NCPPB 312 ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 207863 28 92.9 32 T............C.............. GCAATATTGTTGACGTAACGCATAATCAGCGT GA,T [207856,207859] 207800 28 96.4 32 .............C.............. GCCATCGAACGCGTTATCACAAGCCTCGCCGC 207740 28 100.0 32 ............................ TGATAACCCTGAGTGAATTACTCGAGTCAAAC 207680 28 85.7 32 ..G........T.....TC......... ACACCAGTTTTTAGGTTGAGTTAATCCCTCGA 207620 28 96.4 32 .............C.............. TGGTAAAAGCGATGAATGCATTCAACATCACC 207560 28 96.4 32 ...........G................ GTATGAAGCGACGTTCAAAGACATGCCTCATT 207500 28 75.0 92 ..C.................TGA.C.TC CAGATGCTGCTATCGATTAACGGTTATCATTTCTAAGCTGCCTGTGCGACAGTGAACCACTGCATGATTGGTTTTTGCATAACGTTCGTTTT 207380 28 85.7 32 C.AAG....................... CATGCTGCCGATCGCAACGCGTGGCCACTCAT 207320 28 100.0 32 ............................ CCCGTCGCGCAAGTTACGCAGAAATTGAAGTG 207260 28 100.0 32 ............................ ACAAGAAAAAGGCGCTGGGCCGCGCCTATTGG 207200 28 100.0 32 ............................ GGTTACGCTATCCGGCGTAGCTTCACTGCTCC 207140 28 89.3 32 .......A.T.T................ TGTCACGACGAAATAGACCGCAGAACGCGACA 207080 28 92.9 32 .C.........T................ TATTCCTGTTTGTTTATAGTGATTACACTCTT 207020 27 75.0 0 ...A...A...TGC........-...T. | ========== ====== ====== ====== ============================ ============================================================================================ ================== 14 28 91.8 37 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AACGCCTTTAAAAAATACGTCGCTTCCTGCACAGTCAATATGGCATGAATGTTATCGTTATTTATTTCATTTAGTTGAGCATGTAATTTCTGATAGTTAATATCTGCATGCTGCTTTTTAAAATCAAGATGGTCCTCTAACCGATAGTCATCATCTACAAGCGTTTTTAAAACGGGATCGTATTTCACAGTCACTCACTCCCTTGAATTTGACTTAAATCAACGCACTATTTCCCTGTAAGGGCACTTTAACGGAAAAATGATGATTTTTAAATGTTAATAATGCCCAACCCGTAATTTTTCATTCCCTCGAAAAGAAACTCATTACTTAAAAACGTTACGAAAGAAGGCCATCAATATGCGTTATTTAACGGGGTAAACGCATTGAGCACTTGGCGCAGCGCTACTTCGATAATAGCCAGACAATAGCGCTTGAGGCCGTGGATAAACTGCCTATGCGGCAGTGAACCTGCTGGACGAAACATTCTCGATATCAGAGCC # Right flank : CTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCATTGGTGATGGGGATCGTCAGGCTGTTTCCGAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCAGCATTTTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACTTTTATCTGGCGCAGTGCGATAACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGAGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGGT # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:-0.39, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 528776-529536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHJ01000001.1 Pectobacterium carotovorum subsp. carotovorum strain NCPPB 312 ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 528776 29 100.0 32 ............................. CACCACGACATGGCGTATCGCGCGGATGGTGC 528837 29 100.0 32 ............................. GGAGCCACCGACAGACAGGTTGTCCGGCAGAC 528898 29 100.0 32 ............................. CCGCTCCAGTTCTGGCCAGCATTCAACATCGC 528959 29 100.0 32 ............................. AACTAGCGGGAATCATCAAACTACAAGCAAGA 529020 29 100.0 32 ............................. TAGCCGCTACCGGCGTATGAACAGGTAGATGA 529081 29 100.0 32 ............................. GCGTATGAGGGACAGATTTCGACCACTGATGT 529142 29 100.0 32 ............................. CGCTCTCTGTTCCGGCTGTGGTTATTTCTGAT 529203 29 100.0 32 ............................. TCCATCCACTTTTCGTTAATCAGCGGCTGTTC 529264 29 100.0 32 ............................. CCACTGGTAACGATTCCGTTATCGCATCATCA 529325 29 100.0 32 ............................. GAATGGGTTACGCCTTTGCAAGTTCGCCGTTC 529386 29 100.0 32 ............................. GTGGTTCTAATAAATTACAGGGACTTGTAGGA 529447 29 100.0 32 ............................. AAGAAATTGATGGAAACACTATTTGCGCTGGT 529508 29 89.7 0 ..A..........T..............C | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGATGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCAGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCATCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAACATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 532300-532878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHJ01000001.1 Pectobacterium carotovorum subsp. carotovorum strain NCPPB 312 ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 532300 29 100.0 32 ............................. CATATGAATCCCTACGAGATATAGCGTAATCC 532361 29 100.0 32 ............................. GCACCGGCATCACCAGTCTGCCGGACAACCTG 532422 29 96.6 33 ............................A GGGACATAAGCGTACCTGCGCTCAAACACTTAG 532484 29 100.0 32 ............................. GCAGTAGCGATACATTCAGGTAAATCAAGCAA 532545 29 100.0 32 ............................. GACAAAGTAGCCAAAACCGTGCCAGTGAATAC 532606 29 100.0 32 ............................. AAGAAGTAAAAGATAAAACCCCTATCTCTAGC 532667 29 86.2 32 .......TT....A..T............ TTCGCTGCGTTCATTATGGACCAAGACACACC 532728 29 100.0 32 ............................. AAGTTCAGAATGGACGTCTCTGGGTGGCTGAT 532789 29 96.6 32 .............T............... GGGAGAACATTGCCACCGGGTATTCCGCCGGA 532850 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTCCTGCTAATTATTTACTGCGTTACTTCAAGACGATGGATATGCATTGATTACTTCCAATTTATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATTTTTACCGAGAAATAGAAATAAAAGCGCAGTGGTATAGCTCTTGCAGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCGGATGTATGAAATCAAACTGGCAGAACAGGGAAACGTGGTGATAGCGTGGGCGAAAAACACGGAATCTGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGGAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTTCATGTTGGTCTAAATATCCCCTGCACGGTTCAAATCCAGCCTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTAATGGTGACGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGAAACGGTTGAAGGCCTTGTTAGCAGTGGGCGGTTGGGACGTGAAGAAGGGTCTGCGCTGCTGGGTTTTGTCTCGTCACCGAGAGCCGAAGGGGGAAGTATTCCACCTTCCAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //