Array 1 3604171-3605999 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007230.1 Yersinia similis strain Y_sim_228 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3604171 28 100.0 32 ............................ ATGCATATCCATCTCTAATTCAACTTGACGCG 3604231 28 96.4 32 C........................... TTGATTGAAGCTATGTAATTGGGCGCTGCATC 3604291 28 100.0 32 ............................ AATTAAGGAACTGCCAAGGCTCATCAGCCTTT 3604351 28 100.0 32 ............................ ATACTCGGTACCATAATACGGTCAAACACCAC 3604411 28 100.0 32 ............................ AATAATTAAAGCCTTAGTAATGGCTCTAACTG 3604471 28 100.0 32 ............................ GGTATTCTGCCGCGAGTTAGCCAACTGGCAAC 3604531 28 100.0 32 ............................ AAACCGCCCAGATTTCTCGCATTGAGCAAATA 3604591 28 100.0 32 ............................ AAGTAACGCAGGTTTACAGCTTCACCGCCCAC 3604651 28 100.0 32 ............................ TGACTGCTAATATTAAAAAAGAGCATTGGTAT 3604711 28 100.0 32 ............................ CGGAAGCATTCGGCGAGCGAGAACTTAACATT 3604771 28 100.0 32 ............................ AAGAATGTTTAAATGGGATAAGGACGGCAACT 3604831 28 100.0 32 ............................ AGCAGGAACAGACTGTTGTGACGGATAATAAC 3604891 28 100.0 32 ............................ CTCGCCATTGCCGGTAATTCTTACATTAAAAT 3604951 28 100.0 32 ............................ AGCGTGCATTGACGTGATTAACCCATCATGAC 3605011 28 100.0 32 ............................ AACGGAAGAACAATGGATGGCGCTGGCTGCGT 3605071 28 100.0 32 ............................ TTGTGAGCTACTTGTCAGCTACTAACAGTTAT 3605131 28 100.0 32 ............................ CGGTATTGCGCGCGGATATTTTATTGCAAATG 3605191 28 100.0 32 ............................ GCCCCAGGTGCCACCCAGTTTTTCCCAGTACT 3605251 28 100.0 32 ............................ ATTTCATGAGATACGGAGTTTAGCTTCACGAC 3605311 28 100.0 32 ............................ ATCGATAAAGGATCGGAAAGACGGCAGAAAGA 3605371 28 100.0 32 ............................ TGACTGAACACAGTGAACCCGTACAGTACCCA 3605431 28 100.0 32 ............................ TATGAAATGTATGTAGAAAAAGAATGGGTGAT 3605491 28 100.0 32 ............................ ATAATAGAAGAAAGCTAAGTAAGTTCAGTAAG 3605551 28 100.0 32 ............................ GTCAGCGTCATGACAAACGGGCAGGGGATGCT 3605611 28 100.0 32 ............................ AACCATCCGGTATCTCCAGAGAGTTCAACCGT 3605671 28 100.0 32 ............................ ATCGAACCAAGCCAAAACCCCCAATCCCCGCC 3605731 28 100.0 33 ............................ TGACTTCTCACCCAATACGGTGACTTCCGAGGC 3605792 28 100.0 32 ............................ CTCCCGGTTGGGTGGGCGTTCGTTGTGTGAAT 3605852 28 100.0 32 ............................ TGAAAGCCATAAGTTGCAGGGCGGAAGTCGTA 3605912 28 100.0 32 ............................ TGTTGATACTATATTCATTCAATAACGGGTAG 3605972 27 85.7 0 .................T...CC.-... | T [3605998] ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCTAGAAAAATCAATCGAGGTGATGAACCCTGGCAGGTAGACTATCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCGCACCAAGCAATGCCGTACCTAATCCGCAATAGACGATACCGCGTAACCGCACCAATTAGCCAAGAGTAGAGACCCACAGCCCCGGCAATGGAAGCAATTTGGCTGGCGGCAACCAACCGGAACCCTAAATAGTGCCCATTCCAATAAACGTCAGGTCGATGAGCGCCAGCTGTTTTTTAAATTTGCCCTGGACAGGCCAGAAACATTGGCCGCAGCTCCGCCGTTCTCCTCAGAAGAATAATCATTAGGATCCGGTTACATCCCCATAGATTCTTGTGACCCTCTTTTTTCCACTATTACTAACTTATTGATTTTTATGCTTCTCAGGTGTTTCACTAAAAAAAGGGTTTTTACGCATTTTTCGCAATTGCTAATTGATAAATATCAGCTTATCCGTATTATCTTACTT # Right flank : ATCTCAGCTATCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGTTCAGGGCTAAGCGCTGAACGGCGATGCTGTAACCAGCGCTGTTGCTCACGGTCATTCAAGGTATTCGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCGGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCGGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGCAACCGTGAATGGCTCCGCTTGTGCAAACAGCGCGACCACTCTTTCACGCACCTGTGGGTTTTGACGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4570842-4570153 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007230.1 Yersinia similis strain Y_sim_228 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4570841 28 100.0 32 ............................ TAATTGTCATTTTAGTCAAGTCGCATCGTAAA 4570781 28 100.0 32 ............................ TTATTAGGATTCATATTTCCAACATCCATTAA 4570721 28 100.0 32 ............................ CCCTGCCGGGCTAGCTTCATGTTTCAGGCAGT 4570661 28 100.0 32 ............................ ATCATAGCGCCTAATTTTCGAATATTATCAGA 4570601 28 100.0 32 ............................ CAACATAAAACCCAAGCAATGCAGCCATTACG 4570541 28 100.0 33 ............................ TAATGAGATTAAGGCATCAGTACAATATATGAA 4570480 28 100.0 32 ............................ AGCTTCGAGCCACTAGAGCACGACACTCATGC 4570420 28 100.0 32 ............................ AGAGAGATTAATAAGATGACAATGAAAGCAGT 4570360 28 100.0 32 ............................ AATCATCCTTGCTCATTACATCACCTCCCATT 4570300 28 100.0 32 ............................ GTCACAGAGTACGTGCGACTCGCTACGGATAT 4570240 28 100.0 32 ............................ AATCTACCTGCTAGTCAATATCTCCCGCGTAA 4570180 27 85.7 0 ...................A.A-.T... | C [4570156] ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCGCGGCGCTGGAGGGTGGCCAGAACTACACGGTGTAGCACCAGGTGGATCACCACAGAAATCAATAAGATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCATTGCTCCTTTAAAACATCAATCTGACGAAAAGGCCTTAGCCTAAAGGCTATGGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCAAAGGGGGAGACATATTTATATGCTGTGGTTTATGACATGGTTTGTGGGATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTTCATTGTAGTTACCGGTGGTCTAAAAAAAGGGTTTTTTCCCTATTAGCGAAAGAATTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TCCTGGACCATGCTCTGATGCTATTTGGGGATCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGATAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAAGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAGCTGCATATGTGTTGGCTGCTTTCGTCCTCCCAGTAACTTACTGGTGTAAGCTCTTGGGGATTTACTCAGTTGCCGCCTTCTTGCAACTCGAATTATTCTGAGTATAGAGAGAGTTATTTTTTGGAATAATATCCACTTGGTACCTAAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCTCTAAGGAGTTTTATTTCCATGGAAAATGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGGGGGCGAGTTGAATATGTCACCGATGAAGGTAAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //