Array 1 7682-8431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCJW010000012.1 Yersinia kristensenii strain HR100 NODE_12_length_147438_cov_90.9532, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7682 28 100.0 32 ............................ TCAAAAGTAGCTTTATCAAGCTTTGGCAGGAT 7742 28 100.0 32 ............................ AAGCAATGCAAAGCCACCTGGCAGTTTGTGAA 7802 28 100.0 32 ............................ AAATATGCCACTGAAAACACTTACTGGATTTT 7862 28 100.0 32 ............................ TCAAGCTTGTTCACGGTATCGAGCAGGGTTAA 7922 28 100.0 32 ............................ AGATACCTGCGCGATTAAAGCTTGGCGTGGTA 7982 28 100.0 32 ............................ TGTGACTCCTGAAGAGAAACAGAACGCCCTCC 8042 28 100.0 32 ............................ CGGTGACTGATCGTTTTCAACATAAACCGAAC 8102 28 100.0 32 ............................ GCTATAAATGGACCCCCACGTTACATCGCCAT 8162 28 100.0 32 ............................ GTTGGCATGGGGCGGGGCGTCCAACACGTAAA 8222 28 100.0 32 ............................ AGCCAGAATGATGAGCAGTAGCGCCGGCAGAT 8282 28 100.0 32 ............................ ATGCGTACCTGGTTACTGAGAATGAACCGGGC 8342 28 100.0 32 ............................ AGTTAAGACGAACTGCAATAGCGACGAGGAAG 8402 28 85.7 0 ...........T.........A....TT | CA [8425] ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTCCAGTATGCCATTGAGTATGCCATTAATGATTAGGTAGGGTTGTTTTCATTTGTACTGGATTGAGGTGGTTTTTATATAACCTTTTGTTTTATAGTTTAAAATTGAAATGTATTGTTCCGCATTAGAAATGTTTTTAGCGGACTCCTCCTCCGCCATCATTTCTCTGTTTCTCCTGCGTGTTATCCTTGCTTAATCTCCTGAAATACCTTAATTTTTATCCGGTTATATTTATTCTTTCTGATATAATAAAACGAGCAAAACCCACCCCAAAATAGTGAACTATAACTTTTTCAAACTCCCCTTTTGTTTGTCACATCATCCTCAGCAGAAAAGGCTTCATGACATTTTGCCTTAATCTCAACTTGAACCCTTTTTTTAGCGTGTTTTTTAACGCATTGATTTTATATAGAAATCCCCAAGGTTTTAAAAAAATCATTTTTTATCACCGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : TGAGAGCCCAAACACATTTTGTTACTTACAGTAGGCTTATTACTGTTTTCTATTACCGACTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGGCGCGCTCACTGACTGGCAAGATACATTAACCCGTTAGAACGATTTGGGTGTTCTGTCTAAGGAGGTTGCTGGTGATGGACAATTCTATTCATTCCTCTGATCTAAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGTGTATTAGTTAACGGTGGGCGGGTTGAATATGTCACTGATGAGGGGAAACAATCTCTTTATTGGAATATCCCCATAGCGAATACCACTGTCATCATGTTGGGGACGGGGACATCTGTGACTCAAGCCGCTATGCGTGAGTTTGCCCGCGCGGGTGTTTTAGTCGGGTTTTGTGGCGGTGGTGGCGCACCACTTTTTGCGGCGAATGAAGTTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 17322-18430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCJW010000012.1 Yersinia kristensenii strain HR100 NODE_12_length_147438_cov_90.9532, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17322 28 100.0 32 ............................ AACAAATGTTGTTATTGATAGTTTCTCTGCTC 17382 28 100.0 32 ............................ ATAGGGAGTTGTGGCGAGTACGACGTAAAATC 17442 28 100.0 32 ............................ CGTAGCAGCAGGCGTCGGAGCTATTCAGGGTT 17502 28 100.0 32 ............................ AGCATGCGCAAAGGATATAAATGCATGGCGTC 17562 28 100.0 32 ............................ ATTCCAATGAGCAACCTGCTTACCATCAGGGC 17622 28 100.0 32 ............................ CATTTTTGGTAACGCTTTGCCGTCTTGGCTAT 17682 28 100.0 32 ............................ CCGAGTTACTTATCGCCGCTTATGGCAACCAA 17742 28 100.0 31 ............................ AGTGCGGGATTATAGCCCGGAGGGACTTCAC 17801 28 100.0 32 ............................ CCAAAGCCTCGGCAATCAGTGAACAAGCATTG 17861 28 100.0 32 ............................ AGATTAGGCCAGCCGCACTTTTTACACAGAGA 17921 28 100.0 32 ............................ ACCCCACAGTTGAACTCTCCGGAGATACCGGA 17981 28 100.0 32 ............................ TGCGAAGAATGCAAATCAGAGGTCACTTATCT 18041 28 100.0 32 ............................ AGATAGAAACCCAGCGCCAAGCCGTAGCCGCT 18101 28 100.0 32 ............................ AGAGGCTAGCGCTTGGGATAACTGAACCAATG 18161 28 100.0 32 ............................ TTGATTGCTGGATTTACGATTAAGTATGAAGT 18221 28 100.0 32 ............................ GCGAAGAACTCGACAGCATCAGAGCGCTGTAC 18281 28 100.0 32 ............................ TTACGCCGCAGTCACCGAATGTCTCGCGAACC 18341 28 100.0 33 ............................ AAGAAAGCGGAACCAATTGAGGGTGAATTGGAA 18402 28 96.4 0 ....................T....... | T [18422] ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGTCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGAAATTATTCCGATACCGACACGGGTTCAATATCGGGTCGTGCGCCGCGTGCAGGTAAAAAGTAATGTACAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGCTGACGGAAGAAGAGGCACTATTGCGGATCCCAGATAATCGTGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGCAAGCACCGGTTAGCGGAACCTTTAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATAGAGTTGGCCGAGAAGATTAAAAAAGCCTTTTTTATGATTTTGGTGGGTTATTTTATTATAATCATTGTGTTACTCATGTTTCATTACT # Right flank : ATCTATCCGACGTCTTATTTCTCCTTTTTCGTTGAATACCTCTAAAGAGGTATATATTTGATTTTATGTAAAAATTGTTTGATGCTGAGTTTTTTTTGAGCTGGTTCATAAAATTAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCCCACTGGATGAAATCTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAAATGACTGCCTGGTGCAAACACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATAAGTTCGCGCAGCAGCATATGGATCAATTCACCTCTTGGTTAAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //