Array 1 29-179 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKVH01001017.1 Serratia marcescens strain AS012388 AS012388_1017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 ............................. TAGTAGACGCCTCCCGGAAAGTCGTCGCCGAT 90 29 100.0 32 ............................. CGGGCGGCGGCATGGCTGCGCAGGCTGGTCTC 151 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTGCCCCGCCTGCGCGGGGATGAACCG # Left flank : TAATCATGGCCAAATTCTTCGGAATTTTG # Right flank : GTGACGCCTGCGGCGGTCACCACGGCGCGGCGGTGTGCCCCGCCTGCGCGGGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGCCCCGCCTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 66253-63602 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKVH01000022.1 Serratia marcescens strain AS012388 AS012388_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66252 29 96.6 32 ................T............ CATACCCACGACGAACGGCTCGCGCAATTGAG 66191 29 96.6 32 ................T............ GTTCGAGGTACTCCACCATTGCAGCAAAGTCA 66130 29 96.6 32 ................T............ TCCAGACCGCCAAAACACTCTTCCCCTTTCAG 66069 29 96.6 32 ................T............ GCTACCATTGACGGCCTCACGACCCGTATCTA 66008 29 96.6 32 ................T............ TAATCTATACGAAGGCGAAAGCGAACTATTCA 65947 29 100.0 32 ............................. CGTCGATCCGGTTTGGTGTGGAGGGCTTCAGA 65886 29 100.0 32 ............................. GTGCTCGCATCCTTGATCTTGGCCTTCATCTT 65825 29 100.0 32 ............................. CAGGTGACGATAGCCACGAATCAGGAACGCTG 65764 29 100.0 32 ............................. CATCAGCGGTGCGTTTTATCACGTATTGAAAG 65703 29 100.0 32 ............................. TTCTAAAGTTGAATATGGGTTTCCGAGCAATG 65642 29 100.0 32 ............................. GTAGAGGACTACACCCTTGATGGAGTGAAGGA 65581 29 100.0 32 ............................. ACCGAGCTGGCAACGTAGTCCCGAACGCAACG 65520 29 100.0 32 ............................. ATGGCGGTCACCGCGGCATCCACCGCAGCAAT 65459 29 100.0 32 ............................. GGCGAGCCGTGGCGCATTATTCTTGATAGGGA 65398 29 100.0 32 ............................. AACATGGCAGAGCAGGACGGCGGTAGCTTGGT 65337 29 100.0 32 ............................. TAGCGATGAGCCGATCACCCCACGATTGTTTA 65276 29 100.0 32 ............................. GTCACAGACTTTTCAAAGATGCTCACCAGCAC 65215 29 100.0 32 ............................. CAGCTGTCCTATAGTATCCATCAAGCAGTAAC 65154 29 100.0 32 ............................. CGATGATGGCCCAGCTGCAACTGCAGAGCCTC 65093 29 100.0 32 ............................. ATTTGCCGGCCGGCGAGGGTGATGCTGCCCAT 65032 29 100.0 32 ............................. CTAATTGCATCTTGTCGTCGTCGTCCGGCCAA 64971 29 100.0 32 ............................. CCGACAGTTTTAAACATGGTGCTTTCTCCTTG 64910 29 96.6 32 ............................A AAAACTTGGTCTTGTTCAGCAGTCCATCGCGG 64849 29 100.0 32 ............................. CTGTAGAAGTGGTTTAATAGGCTGCGGCTATG 64788 29 100.0 32 ............................. ATGTGAAGCATTTCCCGCGTTACCGGACAGTT 64727 29 100.0 32 ............................. GCAGTACCACATACGAACGTTTGGACGTACCC 64666 29 100.0 32 ............................. CCGGCATTGCATCATTGTTCTCTAAATGAGAC 64605 29 100.0 32 ............................. TGAGAAACCGACCAACCACGCCACCAACGGAA 64544 29 100.0 32 ............................. GTAGAGAAAATTTTCACGTGCTGGGTTTGGGA 64483 29 100.0 32 ............................. AGCAAAACGATTTGCTTACTCGCGGCCTGATT 64422 29 100.0 32 ............................. CTGGTTCCGTCCGGGTTCTTTATCCTCAATCC 64361 29 100.0 32 ............................. GTATCTTCAGCCATCGCCTTGCCGACTTTTGC 64300 29 100.0 32 ............................. TGCCGTATCGCGCTGTGGTATGCCGCGTGCGC 64239 29 100.0 31 ............................. GTCAACAATTGAGTCCTCGATGGCTTGGGGG 64179 29 100.0 32 ............................. CCATCGCGGATGCCCGTGCGTTGCTGGCGTCT 64118 29 100.0 32 ............................. TAAACCGCGCACGCGGCGCCGCAGATCAGATG 64057 29 100.0 32 ............................. AACAGGCTAACTTCACCGTGCTCAACACAGTA 63996 29 100.0 32 ............................. CATGTTGCATAGATAGTGCTTGACTTTGTTTT 63935 29 100.0 32 ............................. AGCGTCGCAAAGGCGACGGATGTTCTTCAGTG 63874 29 100.0 32 ............................. GGCATGTGGGAGTTTCCGCGTATTAACCAGGG 63813 29 100.0 32 ............................. CGCTCGGTGATTGGGTTCATCTCGATGGTGCC 63752 29 100.0 32 ............................. CCATCCAGGCAGAGACAGTGCTGTATGAGGCC 63691 29 96.6 32 .............T............... TAACCCCAATGCCACTGCGGATCCGCCAAACA 63630 29 86.2 0 ...............A........G..TC | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCAGCCCGGTAGACGTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTAGACGAAAGCCTGCGCCGTCAGGGGCTGGCTGAAAAGCTGGTGTACGAAGGCTTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCCGCCTATGGCCTGAATTGTCGCTGGCCTGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGCAAGACGCTCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAACAGGTTTTAGTTTTTAATGTATTGATAATTAAATTCTATTTGGTGAACGGGAAATTCGCCAAGAATGTGTTTTGAAATTTGATTATAAATCAATTGGTTGTGTTTTCTAGAGAGTCGAAATTATTTGGTAGAATTTGAGGTCTTTAAAAATACATTTTAATTCAATAACATACTCTAAGA # Right flank : CAGAGCTTCACTGCCGCACAGGCAGTTCGAATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGTAAGCAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGATACCAGTGGGGTAAGTCCATCATTGGGGTCCTGTGCAAGGGTAGAGATGACATCAGGCCGCCATAGCTAAGCGCGGCATCTCTATTTTGTCACGATTTAACGATGGATTTCACCACTGGCGGAACGGTTTGTTTATTCCGTCTTGACGATAAGGGATTATTTTACACCCACGGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 71043-70647 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKVH01000022.1 Serratia marcescens strain AS012388 AS012388_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 71042 29 100.0 33 ............................. GTAAGAGCGTTGATCAGCGCCTTCCATGTACCC 70980 29 100.0 32 ............................. ACGTCGGCGCGTCGCTGGCGAACCAGAAGAAC 70919 29 100.0 32 ............................. CAGTTCCAAAACATCCCGCGGATCAGCTGTAA 70858 29 100.0 32 ............................. CCGCGGTTGTCGGTCATCTCCAGCGACAAGAC 70797 29 100.0 32 ............................. CTGATCGTCACCAGGCGTGGCGAGGTATTGAC 70736 29 96.6 32 ............T................ CGGCCCTGACGGCCCGCTAACGCGGAGATACG 70675 29 86.2 0 ..........T.TT............T.. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 97.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAAGTATTGGCAGCAGGAGAGATTGCAGTACCACCACCTTTCGAGGATGCGCAGCCGCCGGCGATTCCCGAGCCTGTCGGATTTGGTGATGTTGGTCACAGGAGCCGCAGTTGATGGCGATGCTCGTAGTGATAACGGAACAGGTTCCTCCCAGACTGCGTGGCCGCTTGGCGGTCTGGTTGCTGGAGATCCGTGCGGGGGTTTATGTAGGCGATGCATCGCGTAAAGTCCGCGAGATGATTTGGCAACAGGTTACTGCGTTGTCAGATGAAGGGAATGTTGTTATGGCCTGGGCGACGAATAATGAATCAGGATTTGATTTTCAAACCTGGGGGGAAAACCGGCGTGAGCCGGTGGATCTGGATGGACTGAGGTTAGTCTCTTTTTACCCTATGGAAAATCAATAAGTTACCGATCTTTAAAAACATGGAAAAGTTGGTGGAATTTTAGGTTGGTAAAAAAATAAATTATTACAATTGGTTATGTTTATA # Right flank : TCTTTTATTGGCGGGGTGCGCGCCATCTCGTACAGCATCCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGTGCTGTCGCTGAATGAGGTGTGGGGCGACGTCGCCATGATGCTGGTGCTCGGCGTGGTCTATACCCTGCTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAGCGGCGGGCGTAGGGGATAAATAAAGGCGCCATTTTCGGCGCCTTTATTATTTCGTATTATTGATATGTTTAAGGTGATTTATTTAGCGGGACGTCTACTCTTGTTTTTAATTTGATTTGTTATGTTGACTTTGGTAGTTGTAATTGTCGACCTGCTTAGGAAATTGATGGTTGGCGTTAACTTTATCTATAACATGTTATTTAAAGGATGGAATAATATGTCAACAATAAGAGCGCTTGATTTTGATGAGATGAAATTGATTGGCGGTTGTGGCGATGGAAATAACG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 81433-79937 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKVH01000022.1 Serratia marcescens strain AS012388 AS012388_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 81432 29 100.0 32 ............................. GTGGCGCACAAACACGTGCACCGCTGGGTGAA 81371 29 100.0 32 ............................. TGCGCTGTACGCAATTGTCAGCTCCAACATGA 81310 29 100.0 32 ............................. ATATCTCAATCACCCGTAACTTCTCATATCCG 81249 29 100.0 32 ............................. CCAGTCCTTCACGTCCTCGGCGTGGATGTGCT 81188 29 100.0 32 ............................. GCCGGAGACTATGCGCGGATCCTCACCGGCAA 81127 29 100.0 32 ............................. CCGTTGGCGTTATACAGCTCGCGCGGCTCCAG 81066 29 100.0 32 ............................. GTCAGCTTCACGTTGCTTCTCCAGCTTCGCAC 81005 29 100.0 32 ............................. GTCTTCTCGGCATCGTGTTTTCTGAATCGGTG 80944 29 100.0 32 ............................. AAGTTCCGCGTACCGCGTGGAGTGCAACGCCT 80883 29 100.0 33 ............................. CCGTTAACCGGGCTGGCGCCGGCATCGGAGTTA 80821 29 100.0 32 ............................. TACACGCAGAGCGCAGATGTGATGACCGTTTG 80760 29 96.6 32 ...........A................. ATCGATTCACATCTTAAATGGCAGATGCCTGA 80699 29 100.0 32 ............................. CTCAGTTTGGCGATTGCGGGCGCCAGCCTTTT 80638 29 100.0 33 ............................. CATCGGCTTTTGTTTACCGCGCAATACATGTGC 80576 29 100.0 32 ............................. TACAAGGCCGAGAAAGAGGCCGGGCTGATTCA 80515 29 100.0 32 ............................. AATTCGAGCCAATCCCCCTGCCAGCACAAGCA 80454 29 100.0 32 ............................. GCCAACAAGAGCCGCACGATTGATGCCGGGTT 80393 29 100.0 32 ............................. AACTGGGGTTTCATCGCTGAGCAGAATATCGC 80332 29 100.0 32 ............................. ATGTGAAAGCCCGGATAATGGGCGGTAAAGCT 80271 29 100.0 32 ............................. AAAGCGTCCGACGGTAGCATTTTTATCGCGTA 80210 29 100.0 32 ............................. TACGGCGTGATCCAGACGGCAAAGCAGCACGT 80149 29 93.1 32 ..........T............G..... GTGTTTGCGCTGGATGTGGTGGCACGGCACCA 80088 29 93.1 32 .......T....................C CAACTGATGGGTAGTTGGCCGGTCAAGATATG G [80066] 80026 29 82.8 32 A........ATAT................ GGCGCGACAACGAAGCCTACAGCAGCATTAGC 79965 29 69.0 0 A.......TA..TA..T........G.AA | ========== ====== ====== ====== ============================= ================================= ================== 25 29 97.4 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : AGCTGGTGACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACCACGCCGATCTTCTACCTGTCCGGCACTATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATCCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAATGAGGTGTGGGGCGACGTCGCCATGATGCTGATACTCGGTGTGGTCTACACCCTGCTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAGGCGGCGGGCGTAGGGGATGTATCTTGTTGTTATAGCGTGAAAATTCGGTAATTCTGCTTTATTTCTATAGATGGATTTTTTATTTATTAAATTTCAAAGGGTTATGTGGTTTCCCGGATGCTTAGATCGCGGTGAAATTTCGTAGATGTTGAAAATTCATTTAATTCAACTAGATATATTTAGA # Right flank : ACCAATAAAAAGAGATAATATCAACCACAAAAAAGTATCATGCTAATTATATCAATTGGTATAAGCTTTTTTTTGTCTTATTTAAGAGAATATATGAAATTTAAATTAATCTTTTTTTGCTTTGGCTTTACTGTGTGAGCTTAACTGGTTTTTTGTGTTTCCGAATAATTTATAAGTACCCTTAATCTGATAGAGATGCTAAAAGTATAAAGCGTTATTTATATCTAAACGGGATTTTTTATGGGAAGCGATATCCCTGACTATATGCGCTACTGGGGAAAGGCCAAAAAGGTAGACTTACCAGAGGGGGATGATTACCACCTGCTAGCTTATCACTGTCTGGATGTGGCGGCGTGTGGATATCAAATGGTTATTGATAATCGTTTCCATGCCGCTGACATTTTTGCAGAGATCGGATTTTCTCGAGATGATGGCGCATACTGGTTTGCTTATTTCCTGACGTTACACGATATCGGTAAATTTGCGCGAGGTTTCCAACA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //