Array 1 1-332 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWMW01000040.1 Klebsiella pneumoniae strain VRCO0390, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 60 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 121 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 182 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 243 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 304 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 182112-179219 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWMW01000003.1 Klebsiella pneumoniae strain VRCO0390, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182111 29 100.0 32 ............................. GCGATCATGCCGTAGTCTTCGATCACGTAATC 182050 29 100.0 32 ............................. TTTGCCTTCCTGTCTGCAGAGGCGCGGACAGG 181989 29 100.0 32 ............................. CGTAGCTAAAATTAACTGCATTCGGCGCACCT 181928 29 100.0 32 ............................. CCAGCTCAATTTCCGCCTGTCCCGCCAGCGCC 181867 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 181806 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 181745 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181684 29 100.0 32 ............................. ATTAAATTTTTCGGGTAAAGAGAAATTGCGAA 181623 29 100.0 32 ............................. CTGCGAGCTACCCTGAATTTCAGCGACAGGGG 181562 29 100.0 32 ............................. TAGTGCCATATATTATCCTCTGCGGTATGACT 181501 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181440 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181379 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181318 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181257 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTACAGGTAATACGT 181196 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181135 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181074 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181013 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 180952 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 180891 29 96.6 32 .G........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 180830 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 180769 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 180708 29 100.0 32 ............................. CTCTACTACGATAACGGATCCCACGCGGGCTG 180647 29 100.0 32 ............................. GCTGCCAGCCCATTCCGTAATTGCCTGTTTCA 180586 29 100.0 32 ............................. GCGAATATAGGCATTAATGCTTTTAATAATAT 180525 29 100.0 32 ............................. CTCCGTCACCAGTTCTGTGCTATCCGGCACAA 180464 29 100.0 32 ............................. TCACGTTTGCAGAACTCGCGGAGGAAGAAGAA 180403 29 100.0 32 ............................. GATCCCCCGGAGGAGACTGATCAAACCACTCG 180342 29 96.6 32 ............................C CGCTGGTTAATGGGCTTCCCGGAAGGGTGGGC 180281 29 100.0 32 ............................. TCTATCGCAACCACCGCTGAGGCGCTGATTGA 180220 29 100.0 32 ............................. CCGCTCCACGGTGAGCGGCTGTTCAATGTAGT 180159 29 100.0 32 ............................. CATCACGCGCTGGCCAATGTGTTAAACCAAAT 180098 29 100.0 32 ............................. GGCATCATTCTCTTCGCTACTCCCGCCGATCA 180037 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 179976 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 179915 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 179854 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 179793 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 179732 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 179671 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 179610 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 179549 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 179488 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 179427 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 179366 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 179305 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 179247 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCACGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //