Array 1 19618-18419 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJKP01000005.1 Campylobacter sp. P0136 ERR460788.12216_4_9.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 19617 35 91.9 35 A...-......-......................... GGCGTGGCGGTTAAAGATAAATATATTAGCAGTTG 19547 37 100.0 36 ..................................... TTTAATTGATTTAGTAATTGATAAAGCTTATCTAAA 19474 37 100.0 38 ..................................... TAAAATTGCTCGGCTTCATCAATTTCAGCATCTCTTAC 19399 37 100.0 36 ..................................... TTTGGAGATATAAATATCGATGAGAGCACGCCACAA 19326 37 100.0 34 ..................................... ATTGCTTGTAAAGGTCTTAGCACCTGCTATGCTT 19255 37 100.0 35 ..................................... GCGATTTTTTCAGCTACATAGCCAAAAGCCGAACA 19183 37 100.0 36 ..................................... GCAAAGAGATAGCAGAAGCTTTTAATAATACAAGTG 19110 37 100.0 35 ..................................... GCAACAAGATAGCAAAGCTGAGATTAAAGATTTGG 19038 37 100.0 37 ..................................... ACATTTAACTTTAAGTTTGGTAATCTAATCTAAAAAG 18964 37 100.0 35 ..................................... ATAAAAAGGCTGATTATCAAAACGCTTTAGTATGC 18892 37 100.0 34 ..................................... AAACTCTTTAGAGAGTAAATCAAGCCTTATAAGG 18821 37 100.0 37 ..................................... AAGTCGCATTTTGCTTTCTGCCTAAATTGTCAATTAT 18747 37 100.0 37 ..................................... CGCAACAAGTAAAACAAATTGCCGACCCCTTAATCGT 18673 37 100.0 36 ..................................... GCAGTATCAGCAAGACTTCCGAGTGTTAAGCTATTA 18600 37 100.0 37 ..................................... TGGATTTGTGCATATTGATACACGGGGCAAAAAAGCA 18526 37 100.0 34 ..................................... TTGGTTAGGCTTTTCCACTCTACATTCTAGAAAG 18455 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 99.5 36 GTTTCAAACCGAGTTGATTTGTGGTATAATTTGCAAC # Left flank : GAAATGTGTAGCGGATTAGACTTGATAGAGTGGATGATACGAATCTCACAAGGCGAGAGATTGCCAGAGCAAAAAGATATCAAATTAAGTGGCCACTCAATAGAGTGTAGAATCACAGCCGAAGACCCAAAAAGCTTCACCCCAAATCCAGGTAAAATCACAAAATATGTTGCCCCAGGCGGTAGAAATGTCAGAATGGATAGCCATGTCTATGAGGGTTATAGCGTTCCGCCGTATTATGATAGCATGATAGGCAAATTAATCGTTCATGATATAGATAGAAATAGAGCTATTGCCAAGATGAAAGTCGCACTTGATGAGTTAATCATACAAGGGATTAAAACAACCAAAGATTTCCATATAAATATGATGAATAATGATGATTTTATCAATAATTTATATGATACAAACTATTTAGCAAAGCATTAATTTAATTTTAATTCCAAGCTAAATTAATTTACAATAAATTTAATGGTGTCTAATTTATAAACTAGACACCT # Right flank : TGAGCTAAATTTAGCCTATTTTATGGGCGTTTGGCTATAGTTTAAAGGTCTTAATTCTTCCACTTTGAAAAAAAATGCTAAAAATAGCGAATTTGTGGAAAAATTTAGCTATAATACAAACGCAAATTATACTATAGATTAACTCTTTAGCGTTTGAAATCACCTAAAGGTGTTAACAGATCGGGGCAACTGCCATATGGCACCCCCGGTATCATTCTCTATCATCACAGTAGTTTTTAAATTCACACTGCATACAAGCAGCTATACTAGCACAACTTTGCGGAAATAGCTCTTGATTTAACATTTTATTAATCTTATCTATCGTGCTATTAAATTGGGCTAAATCATCACTGTTTATATCAAATATCTTAAATTTAAGATTATTACTACAAATTAGCATTATCTTAAAAAATGGTTTATTAAAATGCTTACTGGCTAGCTTTGAGTAGGCTATAAGCTGCATTTTAGTGCCTTTATTTAGTATTGGCTTATTTTGATTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCGAGTTGATTTGTGGTATAATTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 194070-194419 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJKP01000003.1 Campylobacter sp. P0136 ERR460788.12216_4_9.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================== ========================= ================== 194070 50 100.0 25 .................................................. TTTCGCAATTATAAAACATCTCATA 194145 50 94.0 25 .......................C........C...T............. TATAGCAACCAGTAAGCATAGCACC 194220 50 100.0 25 .................................................. CATAGCAACCAGCAAACATAGCACA 194295 50 98.0 25 .....T............................................ CATAGCAATCAGCAAACATATCACT 194370 50 92.0 0 .....T..C.......................C...T............. | ========== ====== ====== ====== ================================================== ========================= ================== 5 50 96.8 25 CATATCAGTTACACTGCTTACATTCCAGTTATTAAGCGGTTGATTGAAAT # Left flank : TGCTATTTTGGTATTAGTGTGGGCTATAGGGCTATTAAAACAATCGGGCAAAATACTACTTGATGCTAATATGAATGAGCCAATAGCTAGCGAAGTGGTAGATATTTTACGCCTATTTAGAAGTGATATAGAAATCAAAGATCTACATCTTCTAAAAGTAGCAAATGACAAATATACTTGTATAATCTCTCTAAATTCCATTGATCCAATTGATATAAATCTTATCAAAAAAGAGCTATCAAAGCACGAAGAACTAGTTCATATAATAGTGGAAATATATCCAAAAAAAATATTAAATTAAATTTTAATAACAAGAAGAAAATATGAACAAAATTTTAGCTATTATATTATTTACTAGTGTTTGCTAAGCTTTAATAAATAGACCAAAGCAAGTAGCTTTAAAATGGTATCTCATCATCATCTTCATCATCATTAAATTTAGACTTAGTAAATTTAGGCTTATTCTCATCATTAATTTTGCAACCATCAAACATCAAACT # Right flank : TTTTCGCAACCTCTAAACATCCCGCTCATATCAGTTACACTGCTTACATCCCAATTCTCAATACCACTAAAATCTTTACGCCAACTCTCATAAAATAACCAACTCATATCAGTTATAGCGCTAGTATCTATATCACCTAAATTTAAACTTTCTTCTCTTACTAAACTTCTTAATTCATCTTTTGTTTTTGGATAGTGTCGTGTTTTATTATTTACTATTTTTCTCTCTACAAAACATGTCAGCAAAAGTTCATCAATTAACTCTTGAGATAGTTTGTCTCTCCAGCTATCAAGTGGTTGATTGAAATTTTCGCAATTTCTAAACATCTCATACATATCAGTTACACTGCTTACATCCCAGCTATTAAGTGGTTGGTTGAAATTTGTGCAATATTCAAACATCCCTCTCATATCAGTTACACTACTTACATCCCAGTTATTAAGCGGTTGATTGAAATTTTCGCAACCTCTAAACATCTCACGCATATCAGTTACACTACT # Questionable array : NO Score: 4.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:-0.75, 7:-0.40, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATATCAGTTACACTGCTTACATTCCAGTTATTAAGCGGTTGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //