Array 1 21779-22668 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJERZ010000015.1 Staphylococcus pseudintermedius isolate 16S07410-1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     21779	    36	 100.0	    29	....................................	TAATAACCTCTTCTATCACACGTTGTGCT 	
     21844	    36	 100.0	    29	....................................	TAAAATCAGAAACGAAAGGGCAAGCAGTA 	
     21909	    36	 100.0	    29	....................................	CTTTAAACTTATTTCTTAAATCTAAATCA 	
     21974	    36	 100.0	    30	....................................	GTAATACTTTGCACCTAGATAGCGATACAG	
     22040	    36	 100.0	    30	....................................	TGTCATTTGTTGAAAGTGTTGAGTACTTGC	
     22106	    36	 100.0	    29	....................................	GAAGTATTGGGTTTATTGGCCGGTCCAAT 	
     22171	    36	 100.0	    30	....................................	GAACTCTGTTAACACGTGAATGATGTAATC	
     22237	    36	 100.0	    30	....................................	AAATAGATGAGGAAACTTTTAATAGTATCA	
     22303	    36	 100.0	    30	....................................	ATATTGAGCATATTCAATTTGTTTTTCAGT	
     22369	    36	  97.2	    30	............................A.......	CTGTGGAATATTTTGAGTAACTTCTGTTGC	
     22435	    36	  94.4	    30	.............A..............A.......	CAACGTGCCATTTGTCATGTTTTTACGCGT	
     22501	    36	  97.2	    29	............................A.......	AAACCGAACGCGCTTATATGCTTTTACGT 	
     22566	    36	  97.2	    30	............................A.......	GTTATGATGTTTGGCGATATGGGTCGTCGT	
     22632	    35	  88.9	     0	..........................-.CA.C....	|                             	TC [22665]
==========	======	======	======	====================================	==============================	==================
        14	    36	  98.2	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTGCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTTCTTTATAATCGTACATCAACCTCACTATGCCTTCAAAATAAATAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTACGAATCTCTCGATTGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGCC

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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