Array 1 19926-20620 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065957.1 Methylacidiphilum sp. IT6 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 19926 37 100.0 37 ..................................... ATACCTAAAAATTAGCAACTTAATGGAAATGATCTTC 20000 37 100.0 36 ..................................... CGTTACCTTGACGTTTACGGGAATATCGGAGTTGCA 20073 37 100.0 36 ..................................... GGTTTTGCTACTCTAGAAGGTTCGCAAGACAATACC 20146 37 100.0 35 ..................................... CTGATTACATTTTCATTTCAGTTGTTGACCATTCG 20218 37 100.0 36 ..................................... AAGGACATTGATCCGCTCATTGTTGATTTTATTTCT 20291 37 100.0 36 ..................................... TTTCATCATTTTTACCTTATTTTGGTTAATTTTTAA 20364 37 100.0 36 ..................................... CGTTACCTTGACGTTTACGGGAATATCGGAGTTGCA 20437 37 100.0 36 ..................................... AAATCTATAAATCCCTCAGAAGCTTCCTGGGCTTCA 20510 37 100.0 37 ..................................... CATATTTCCAATACAAAGGCACAGGAGACCAGAAATA 20584 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 100.0 36 CTTCAATGAAGCCGAGGCCTTACACATCCTCGGAAAC # Left flank : CCAGAAAGGGAAAAAGGTCCATGTTTTTTCAGCACAATGCATTGCCGAAACCCTGTTTCACCCCTGGCATTATGGAGATCCGACTCCCTCTTTCCGGTGGGATCCTCAAGAAGAAAGGCGCTATGCGCTTCTCTATGGAGATCCAAGCAAGACCAATACAACAACGCAGCACGGCGCGAACCGGCTAGCGGCCGTTGGAATTGGTACTCTCACCTTGGTTCCACAACTCCGATCAAATAGTGTGCGAGCTAATATTCTCGGCGGATCCTTCGAAAAGGGGGAATTTTCCTTTGCTTGGCCGATATGGCGCAAGCCGGCCACGCTCTCTGCCATCCGAGGCATGCTTGCTCACCCAGGATTGAGAAAGGAAAATGGGCTCTCCCATTTGGGAGTAGATTATGTCATGGTTGCAAGACGGATTCAGTACGGGTACTATAGTAACTTTGTTCGTGCTGTTCCCTTACATCGTTTATGATCATAATGCTCTGTCATGCTTTTTA # Right flank : CTGCCCCTTTGTAACTCATTGCCTTGCAAAGCATAAAATTCTGTTTTGCGAGCATTTCCCAGAAATAAGATTACACCATGATACTCGGATGACATTGTTAAAGATCAACAACCATCTCTACACGGATATTTCTTCAGTAAATTATATCGAAAATGAAAAAAGTCAATTCCAGATGATCATCGCTCACCAATAGTCTTTGGGTTTTGGTTTGTGGATACCGATTCGATTATTGAAACGTGACCATTGAAGAGAGCAACGAAAGGATAAGATATCACTTTAAGGGGATTTCAAAACTAACGTGATATATCTGCTGATGATGAGCGGAAAGTCTGTGTGTAGATGGTTTAGGAGAACTGGGAATACCTGCTTATTCATTTTATAATGACATAAGGAGTGCATTGCAAGAAGTAAATGTTTACAACAAGAAATGGTAAACTTCTAGGGTGGAGATTCAGCAGTTGCGTCAGCAAGTTGCTCTTGGAATATCAGCCGGAGATCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGAAGCCGAGGCCTTACACATCCTCGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 584111-588825 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065957.1 Methylacidiphilum sp. IT6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 584111 37 100.0 39 ..................................... GAGATATCCGATTACCTGAATAATGTTAACGGGTCAATC 584187 37 100.0 38 ..................................... TTACTAGCTTAGCTACCTGATACGACCTAGCAGCCTTT 584262 37 100.0 36 ..................................... CTTTTCGGCCTCTTGGATGGCATTTTTTAAGGTCTC 584335 37 100.0 39 ..................................... TCATAATTGGCTCCCTTCCTTGCTATGTTGAAAATTAAC 584411 37 100.0 40 ..................................... GTCATTCTTATCACTTTCCCTTTCGCAGGAAAGCCCATTT 584488 37 100.0 37 ..................................... CTCAAGACCGTTGATGGCAATGATTTTATTATATTCT 584562 37 100.0 39 ..................................... TGGTTCCCAATAATATATATAAAATGATATTGGCCTTTC 584638 37 100.0 41 ..................................... CCTTGTTTGTTGTTCCACAAGTATTCTTTCATTTTATTACC 584716 37 100.0 38 ..................................... AGTCTCCCAGCCTTGATAACCAGAGATTGGGCGGACTC 584791 37 100.0 37 ..................................... AAATCTCGCATTTAACTTTCATTTATATTATTCCCCA 584865 37 100.0 41 ..................................... TCAGCCATCCAATTACCTCTTCCTTTTTCATTTCTTTTTGT 584943 37 100.0 39 ..................................... ATAAAAGCTGATATAGTTTTTCTTCATTCATTTCTTTCC 585019 37 100.0 37 ..................................... TTGAGATTTAATAATTTTCCAGAGTTCAGGAACTGAT 585093 37 100.0 38 ..................................... GGATTTGTCTTTTTAACTTTCTCCAGAAGTTTCTTGGA 585168 37 100.0 39 ..................................... GAATTAATTCAATTACTTGACCTGGATGAGCTGCTGCTC 585244 37 100.0 38 ..................................... GAGCTTCCGTGGGCTGATGGCGGGAAAACCACAACGCA 585319 37 100.0 37 ..................................... GCGCAAACTTTTTCAAAGAACTTTTCTGGCTCCTGAG 585393 37 100.0 37 ..................................... TTCAGAGGAATAAACTCTCCCCGGAAAATATTTTTCA 585467 37 100.0 37 ..................................... GCGTCCTTCATTATCGACAATGAGCTTACTAAAATTA 585541 37 100.0 37 ..................................... CTTCCCCTCATAATTCCATCCAGCCCAAGGATGGAAC 585615 37 100.0 38 ..................................... TCCAACACGGAAAGATATAATCCGGCTCGTCTTTATTG 585690 37 100.0 37 ..................................... GGGTACTGCTGAATCATTACCACTAGAGATTGATGTT 585764 37 100.0 39 ..................................... ACATATACAATTCCCAATCTTCCCTTACTTTTTGGGAAA 585840 37 100.0 37 ..................................... TCCATTATGTATTCTCCCCCCGGAAAGTATTCATTAA 585914 37 100.0 37 ..................................... GGTTTTTTGAGGACTCGCCCGAGCCCTCATTTTACGT 585988 37 100.0 39 ..................................... GCTGGCTCATGCTTGTTGAGCCAGACAAGCTCTTTTACT 586064 37 100.0 38 ..................................... AACTTCCTTCCCCGTTACGGGGAAGAAAATAAACACTT 586139 37 100.0 40 ..................................... CCCCTCAACCCAGATTGGTTCTGAGTTGAGGGGAATGATA 586216 37 100.0 38 ..................................... ATTTCCTATGATCTATAAGCCGATCTTGGTAATCAAAA 586291 37 100.0 41 ..................................... GGGAAATATTTATTAAGATCTTCCTCAACCTGATCGAGGAA 586369 37 100.0 39 ..................................... TTCCTCGACCTTATCAAGGAATTGAGCCACATCAGGGAA 586445 37 100.0 40 ..................................... GCTCCCAGTTGGCCAACTGGAAGCACAATTCCTTCTACCG 586522 37 100.0 39 ..................................... AGCCTTCTAAATAATACTCCTCCGCTATGGAGGAGAGAT 586598 37 100.0 38 ..................................... CAGCCAATATCTCCAATTTACCTCGATCTCATACGGTA 586673 37 100.0 41 ..................................... AAAGAACACACCTCTGGTACCATGGTAGATGTGAATGTTAC 586751 37 100.0 38 ..................................... GAGGGTGAGGGTTAGGATTGGGGTTCCCACCTACCTTC 586826 37 100.0 37 ..................................... CGTCTTCTTTTGCAAGTGAAGGTAAGCGGTGTGTTCT 586900 37 100.0 44 ..................................... AGCAACCCGAACCGGGCCACTCCCCCGACGGAGGATGATGCAGC 586981 37 100.0 37 ..................................... ATAATCTTTCGGCCAATGCTTTTCTACATAAGCTTTT 587055 37 100.0 39 ..................................... ACCCGTTTTGAAACAGCCATTCCTTAGATCTTATATGGG 587131 37 100.0 38 ..................................... GGGGAAACAAAGTGCCCGTAATCTTTCACCGGGAAAAC 587206 37 100.0 39 ..................................... TTTGCCATCGTAGTTCCAACCAGCCCAAGGGTGGAACTT 587282 37 100.0 39 ..................................... GAAATTTCGAACAGCAATCTCCCGACTTTTCTTTTGGGA 587358 37 100.0 38 ..................................... CATCAACCAATTCCTTGGAAGCTAACTCACTCAAGTCA 587433 37 100.0 37 ..................................... TCCATTTACAGTCTATGTATTCTGGCTCATTGTAATT 587507 37 100.0 38 ..................................... TTATGAGGTTAAAATGAAACCCGATAAGTCATATACAT 587582 37 100.0 36 ..................................... CACTTTTCTCTACACTAATTACATACTCCTCACAAC 587655 37 100.0 39 ..................................... GAAATTTCGAACAGCAATCTCCCGACTTTTCTTTTGGGA 587731 37 100.0 39 ..................................... AGCCCCCCTTTGTAAACATAGAGCCGCTCATTATAAATA 587807 37 100.0 39 ..................................... CCCACAAGATTGTCGCGTTAAAAGGAATGACTGCTCCCA 587883 37 100.0 37 ..................................... AAAACCACTTCTACCATAGCTTCAAGATGATCTGGAG 587957 37 100.0 38 ..................................... CATCAACCAATTCCTTGGAAGCTAACTCACTCAAGTCA 588032 37 100.0 37 ..................................... TCCATTTACAGTCTATGTATTCTGGCTCATTGTAATT 588106 37 100.0 38 ..................................... TCCTGGTTGAGGTTTTTTGAAGGCTCTACCCGAGCCCT 588181 37 97.3 39 ...............A..................... TTTATTTTCTATTTACGAGGATTCACCCGAATCCTCATC 588257 37 100.0 40 ..................................... TTCTAGCTCTTTCCTTGTTTTTTCTTTCATTGTTTTGCTC 588334 37 97.3 39 ..........................A.......... CCAGACCAGTTCTTTGGTTATATCCTCAAGGGGAAAGTT 588410 37 100.0 38 ..................................... GACTTTTCTCACTCTTATAATGTCTCCTTTATTCAAGG 588485 37 100.0 38 ..................................... AAACAGGCTTGTGGAAATATCTCCAATCAATGTGTCTA 588560 37 100.0 39 ..................................... TCATCTTCCTCTACAAAAGTCCAATACCCTGAATCCCAA 588636 37 100.0 39 ..................................... GAACGAGAAACATTCCATGCTTCCCAGACATGGTATTCC 588712 37 100.0 40 ..................................... GGGAAGTGCGGAAGATTTAGATTGATCTCTTTATCCTGAT 588789 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 63 37 99.9 38 GTTAGAACTAGAGATGAAGCCGAAAGGCAATTGAGAC # Left flank : AAAATTTGTGAAGATTATGGTGTAAGGGTTCAGTTTAGTGTTTTTGAGTGTTATTTAGAAGAATCAGAATTGGAAGGGCTTTGGAAAAAATTACTTTCAGAAATCAATCCAAAAGAAGATAGAATTGTTGCCTATAAAATTGATTCTAGATTAGCGAAAGAAATTAAAACAGCAGGTACAATGGTTTGTTCAGAGAAAGTACTCTGCTTTTTGGTATAATGTATAATATTTGAAAATTTTACGGTTTTTTATTATAAAATGATAACTTGAAAATTTTATGACGGTAGTTTTGTTTTAAAAATTTCTAATTTAGGTATTGACTACAAATAATATAAAAAAAGATATCCCAATACCCATTATTATCATGCTGGTTATGAATAAGTTATTATTATCAATTGCAATTCTAAAAAATTTAAAGCAAATAGAATGCCAATCTAAAAATACAGTCAATACCTTAATATATATTTCTATTTTGATATTCAAAGACTTAGAAATTCGCA # Right flank : CTTCTTTTCACATTGTTTTATGCCAAACCTCCCAACAGTGTTGGAACTAACTCTTCCGAAACTTCAAGATATAATGTGCTGTAGCTCAATGATATCGTCTTTTTATTCTGACTACATAGTCCATTTGAACGGATGATCAAAGAGCGAAAGCAAGTCGAGTTTATGAAGCAACGTATTGAGCTTAGTAGGGATCCTGGATAAGAGCCCAATCACAGGCTTTCCCTTCGTAGATAGTTGGACCAAGCGGATTGATTGCAAGCGACGGGGCACTTTGGAAACTTTTTCGGTAAAATCCTTCTCTACCCATTCTATTCAGAACTGGGCGCTGGGCACAGAATCAAAATGCCTAGAAGCAGAGCCTTATATGATTACGAACTCAGTCCGGTCCCAATGATTGATCTGACGGATTTCCAGGTAGCTTTTGAGCTCTTAGAAGGCTGACTTCTTCAAGCCTCTTGTAGTGCGTAAGGACTTGCTGATCCAAAGTTTTGGCTGAGGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAACTAGAGATGAAGCCGAAAGGCAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 1246902-1244591 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065957.1 Methylacidiphilum sp. IT6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1246901 37 100.0 36 ..................................... TAGAAATATTATTTACTTGTAAAGTAATATTATTTT 1246828 37 100.0 37 ..................................... CCTCCAGAGGCTATAGAAGTCATAAAGCCAGAGACTT 1246754 37 100.0 36 ..................................... CCCATGCGAATTCTATATCATCATATCCCCAAGCCC 1246681 37 100.0 37 ..................................... ATTCCAAAAGATATGATAGCCGCATCATTTTCAGATG 1246607 37 100.0 37 ..................................... TAAAAATATTAATCGAGCCGCCGGAAGGCAAACAATA 1246533 37 100.0 36 ..................................... GCAAAATTTATAGAACAAAAAAAGCAAAAAACAGGG 1246460 37 100.0 38 ..................................... TATTATTGGGCAGATACAAGTCTTTGGACAACGGTATT 1246385 37 100.0 37 ..................................... GGGTTAAAGGTAACGGGCCAAGCATTGGACTGGTTCC 1246311 37 100.0 36 ..................................... CATTTTCCTTAGCATAGCGACTTGGTCTTCGATTGG 1246238 37 100.0 37 ..................................... AGGGAAGCGCTCCTTGCCTTACCCGCGGAAGAAAGGA 1246164 37 100.0 36 ..................................... CGAAACGGAAAAGAAAGCGGGAATAAATTATGCCGA 1246091 37 100.0 38 ..................................... CTATAGATTGCATGGCAACTCTTACTGGATTTGTATAG 1246016 37 100.0 37 ..................................... AAATCTGCAAGTTATCCCCTACAGCATTGATTCCAAA 1245942 37 100.0 35 ..................................... TGCCAGCTTGGAAATAAGGATTTAAATAATTTCCC 1245870 37 100.0 37 ..................................... GCCTACATTGGCTAGATTGCTCATCTGGCTAAGGCCA 1245796 37 100.0 37 ..................................... TAGCATGATCACGGAATGGTATATCAGCCTAAAGAAA 1245722 37 100.0 35 ..................................... ATCGCATTGCATACTATATAATAAGTAGTAGCAGG 1245650 37 97.3 36 ...................A................. TCCCCGATTTGAGGCGGATTCCATGATATTCTTCCT 1245577 37 100.0 36 ..................................... AAGTAATTTGCCGGAAAATTGGGAAAATTTAAGTGT 1245504 37 100.0 36 ..................................... CCTGTAATTCCTTGTATTTGTTCATTCGATGGGCTT 1245431 37 100.0 35 ..................................... AAACAGTGGAAGATCGAGAGAGAAAAAATGATATG 1245359 37 100.0 36 ..................................... ATTTGCTACGCCTTTTTTGTCGATCCTTCAATTCTG 1245286 37 100.0 35 ..................................... CTCTGATTTAATACTTGCCCACGCAACTTATTGGA 1245214 37 100.0 37 ..................................... TTCGTCTTCCCTATCTTCCTCATCATCCTCATCATCA 1245140 37 100.0 36 ..................................... GGAAATGGCGGGGAGAAATCAGGCCCTTGATACCTG 1245067 37 100.0 36 ..................................... CCTTCAAGCTAAATAAATAATAAGTGCTTCTCCCAT 1244994 37 100.0 37 ..................................... CCAATACTCCACAAATAACCGAAAGCCCCGGGAACTG 1244920 37 100.0 36 ..................................... AAGTCCTTTTTCACTTATTTCTACCCATGATGATGC 1244847 37 100.0 37 ..................................... GTATAGCCACTCCCGCCATTCGTGACTTGAATTTGAT 1244773 37 100.0 34 ..................................... TTTTTGTCGATAATTAATTTTTTCATTTTATTTT 1244702 37 100.0 38 ..................................... GATGCTCATAGAAGGCTAGCCAATATTATAAGACCAGG 1244627 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 32 37 99.9 36 GTAGAAACTAATATAACTCCCTGAAAGGGATTGAAAC # Left flank : GTCGTATCCTATGACATAAAAGACGACCGTCGTAGAGGAAGAATTTTTAGAACCTTAAAAAACTTCGGGCAGTGGGTTCAGTTTAGCGTGTTTGAGTGCGATATTGAGAAAGGGGATTACCTGAGGATGAGGGATATGCTGGAAAAGCATATAAACCTACAAGAAGGTGACAGTATCAGATTTTATTTTCTATGTGAAGAAGACATTCGGAAGATCGAGAGGATAGGTGGTATTCAACCTATGTCTGAAGAAGCAATTATATTATAAATATTGTGAGCAACATTATTTGAGAGATAATGTATACGACGACTCCGAGAATCGAAGCTTACATGAAGTTCTCTAGGAATACTCGGAGATCAAAAATGCTTGATATTATCTTGAGTTTATGAAAGAATTACAAAAAAGATTATTGCTCTTTGACAACTTAATAGCCAAAAAAAAGGAAGATGCTCGGAAAATTATTATAAGTGCCATGAATATCAAGGGATTGCGAAGAGTGA # Right flank : CCATAGGTAAGCCAGAGGGAAGTTTTAAAAATAATCAAAAAACATTTTTTTCTTCTTTAAAAAAAACTTATTCTAGCTATGATGAAATCATGCCCATAATGGCTTTGATAATAATTTTGTTTGTATCCTTCTCCTTTTTTCTTTCTCCTAGTTATGCCTTAGAAAGTGGTTCATCATCTGCCAAGTCTGCTGATACTTCAAGCAAAAAACCGACGGAAATTAAGTATGTTGTAAAAAAGGGAGATAGTCTTTGGAAAATTTCCAGAAAATACAAGGTAACCGTTGAAGCCTTGATGGCTATCAATGAGTTAAAAGATGACCGATTGAAACCTGGCCAAGAATTAATCATTCCTCCCAAAGGCTATAGACCACCTCCTAAAGAGCTTTTGCCACCTCCTTCTCAAGAAGAAAAAAAGGATGCATCAAAATCAGCCGAGCCAACCCCATCACAAAACCCCTGATTTTTCTGTCTAAGCACTGGCTATAGAGTGTATCAAGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAACTAATATAACTCCCTGAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //