Array 1 17666-18240 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARN01000022.1 Gilliamella apicola strain N4 NODE_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 17666 26 100.0 35 .......................... CCGCTGATTACATCCTCATTGGTTGGTTTCGCTGA 17727 26 100.0 35 .......................... CCGACCAGTGCATTAAACCAAACTCTGCCAACCAT 17788 26 100.0 35 .......................... CCGATTGTAAATCTCGCAAATAGATTGAAAAAAAA 17849 26 100.0 35 .......................... CCGTCGTGGCAATTATAGAGGTTATGCAACGTTTT 17910 26 100.0 35 .......................... CCGGTCTGCTGAATTAGAGTACGCACGGTTATCAA 17971 26 100.0 35 .......................... CCGCGCGGAATACTAATTATAAAAAAATTTTCATT 18032 26 100.0 35 .......................... CCGATGTGAGCATGCCCTTTGTTTGTAAATCGTAT 18093 26 100.0 35 .......................... CCGAACGCAGTAAATATTATGCTGAATTCAGCCTT 18154 26 100.0 35 .......................... CCGATTCTTTTAGAGCTTTAACACCACAAAAAGAC 18215 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 10 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TTTAAATTAAACTTAAGGTGAATTTAATTTCATCAGAAGAGTAAATTATGATAACCATGACGATACAATTACTAAAAAAGTTGATATTTGTATTGGTTGCCGAGAAAGTCAGGTATTTCCTCTATATAGGGGTAAAAGATGTCAAAAAGTTTCAGGTTAACCATACGTTTCAGTATAAAAATCAATAAACAATTTAGCTTAACTTAACCTTATGTTCCCTGTACGCACAAGGATAAATCGGCAGGCATCAATATTACATAGTATTTTTTACTATTCAAAAAATCACAATTATATATTTCATTGTTTACTTTTTTTAATTATATGAAAAATATAAATTTATCGGTAGAATCTCGTAGAATGAAATTTTAATTTCTATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGA # Right flank : ACCAATATATTCTATAGATAAAACTCGTTATTATTAATAAGAACAATATTGTTAATTTAGGGATAATTTTTCAGGTAAGCGTTTGAGAATGATAACTCAAAAAAAATTATAAAAAATCTTCTAAAAAAGGGATTTAATTATCATAAATCAAATGATATGGTTGATTTCTCGAATCTTCGAACTTTTCCCAAATCTTATGGGTCTTACGATAATTTTTTGAGTATCAAACAATTTATTTTTTTAGAAATGGTACTCAAATATGATTTATTGCCAATTTCGAAATTAACCAAGAAAAAACAATTATAATGATAAAACATTTAGAAGTTACATCAAACTATTTGCTAAATCCAAAATGTCGAAATTGAGATAAAGATTTTTAGTTGAATTAGTTAATGAAGTAAAAAATTCAATTAGTTCTGTTAACCAAATAATTACTACAATAATAATTCATGATGATAATAAATTGCTTTTAGCAAAGAAAAAAAGATTTGCTGCCCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50043-50253 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARN01000014.1 Gilliamella apicola strain N4 NODE_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50043 29 100.0 33 ............................. CAATCAGGCTAATCAACTAATGCAAATGCGCGC 50105 29 100.0 32 ............................. ATTTACAGGCTCAAATAGAGGTTTTGGAGAGC 50166 29 93.1 30 ...........G..T.............. GCTAGACACACACTACACAGACCCAGAGCT 50225 29 79.3 0 ............C..........TTTT.T | ========== ====== ====== ====== ============================= ================================= ================== 4 29 93.1 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TAACATTAACTTTATAGCATTAATTAGCCAGTAATAAAAATACCTGTTAAATCAAAACAATTTGCTTAAAAAACAACCCAAAAAGTTGGTAAAATTTTAATTCTCCTATTTTAATTATAAAACAAAAAGTTATAATTAGAGTGTTCCCTGTGCACACAGGGATAAACCATTGGAAAAACGCTAAAAATCAATCTTAGGTGCATGTTATCTGTACATACAGGGATAAACCGTCGATGTGTTAATATTACATAGCATTTTTTTGCTATTCAAAAAATCGCAATTCTATATTTTAATTTTATTGTTGACCATTTTTTAATTACATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTCCATTAATTTTAATTAATTTAATAAAAACATAGTGTTATGAATTATGATTTTGATGAAAAATATCTCAAAAAACCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAATATGTTATAATTGGT # Right flank : TTTTATGCAAGATTTTGCTAATTTTTGTTAAAAAGTTTCAGGTTATGCCTACGTTTCAGTATAAAAATATATAAAATTAATCTAGTTAACTGATCAATTATCCGATGCACAGTAATACGTTATCAAGAGACATAATAACTAATGTATTAAAACCATACTTCAACAAAGTGAACAGTTAAAGTAACGTTTTGTTAGTTCTTGATGTTCATTGGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGATCTGACTTGCAGCATCGTTATGGAGAAAAGATCTATAAATTAACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGTGTTGGCGGTTGCACTTTTTGTAATGTTGCGTCAATTATCGATGAATCTATCCAAGTTAAATCTATTTCTGACCAGCTTGCAACTCAAGCGCATCAAATGAAAAAATCAAAGCGTTATCTTGCCT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22418-22934 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARN01000005.1 Gilliamella apicola strain N4 NODE_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ===================================== ================== 22418 26 100.0 35 .......................... CCGGTAACTAAGGTCAATAACACGGATGTTACGCT 22479 26 100.0 35 .......................... CCGGGTTAGAATTTAGTACATTTGCAGAATTAAAA 22540 26 100.0 35 .......................... CCGTTAGCAGTTTTCATAATATCATCAATAGATTC 22601 26 100.0 35 .......................... CCGACACGGATATTACCATAGGCGGAGATTTCGGT 22662 26 100.0 35 .......................... CTGGGCGTATAATTGATCGCCCTTAGTTAATAGGT 22723 26 88.5 35 .............G..T.T....... CCAAAAATGAAATCGATTACAGTTTTTGTGAAATC 22784 26 92.3 37 .........A......T......... CCGCTATAGTAATGGTACGCACAGATAATGCGTACGT 22847 26 96.2 36 ..............G........... CCGGTTATATATTTGCACTAAATTACGCCCTTCGGC 22909 26 96.2 0 ........................T. | ========== ====== ====== ====== ========================== ===================================== ================== 9 26 97.0 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACCTGATGATGCCCTGCCACCCGCTATCCCAGAACCTCAATCTCTAGCCGATAGTGGCTTTAGGAGTCGCTAATATGAGTATGTGTATTGTGGTAACTGAAAATGTTCCACCACGATTACGTGGACGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATTGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTAGCAGAAGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGTTGCCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : ATAGTTAGATTAATTAGGTAAAGTAATGAAAGGCTTTTAGCTACAGGGTTATAAGCATATCTTCTCCTTAAAGTCTTAATAACGTTTTAACTTTATTTCTTTACCAATAATAGACATATATTTACTTTTATATTTTCATTAACATAAAAAATCGAATAATATTTATTAAAAATCTTGGATAGCTGTAAAATTCGTTTTAAAACACTAAAAATAAAGGTAACAGTTAACTAACTAAACTAATAATCAAAAATAGCGTACAATAGCGCGATATTAAACATATGATCATCATAAATAGTTTAGGAATTTAGCATGACAGGCAAATTTATTGTCATTGAAGGTATTGAAGGTGCGGGTAAAACGACAGCAGTCAATACCGTTGCTCGTATTTTAAATCAATATCATATTTGCGATTTACAATTTACTCGTGAACCAGGTGGTACACCAATTGCTGAAGCATTACGCAATCTTATTAAAAATGGTTTAGATGATGAACCTTTGAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 460-788 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARN01000045.1 Gilliamella apicola strain N4 NODE_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 460 26 100.0 35 .......................... CCGTATCGCGTAGGGCTGTTCGAGCTGGTGCTGTA 521 26 100.0 35 .......................... CCTGATGCAGGCCGTAATACAGGGGATTTGCATGG 582 26 100.0 34 .......................... CCGTAACGGCGGGAGTGTATGTTTCCATGAGTTC 642 26 100.0 34 .......................... CCGGAAAGGGGGGGCGTTCGCCATACCTAACATG 702 26 92.3 35 ............C.T........... CCGGCAGAACTAGACACAGAAGCAATCAGTGGATA 763 26 88.5 0 GC...........G............ | ========== ====== ====== ====== ========================== =================================== ================== 6 26 96.8 35 ATGTTCCCTGTATACACAGGGATAAA # Left flank : GTTATAAACAACACACCATGTTGAGCTAAGATAAACGTTTACTATTAATATTGAGTAATAGCTTACAAATAACAGCGTTTATAAAATTATTTCAATTCAAAAAAATATATTGAATTACTCAAAATTACAGAAATGCACTTTCAAAAAATGAGTACTTGAGATTAATTTGTGAAAATTTTATAACTAAACTACATCAACAAACAACTTAAAAAGTAGAGTTATTTTGATAACAACAAATCATTAAAAGCAGAACAATAAAAATTCCCATTTTTTAACTAAATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCTAATTTTAATTTCCATCAATTCTAATTAATTAAATAAAAACAGTGTGTTATAAATACAGATTTTAATACAAAATAGCCTAAAAAATTGGTATAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGTA # Right flank : ATCATAATAGATTAGAAGTTGTTAATTTTATATGAATGGATTCTAAATATTATTTATACGACATATATTTGATTGATTAATGAGTTTTTAAGGTTTGCATGGTAAAAGTATAAAATAAATGAATTTTTACCTATCAGTATAGATAAGCAACTAAACTTATAAATACAAAGTTATTTTATTGATTATGCTCAATAGCGCTTACAGAATTTGTTTTGTTTATAACTGCATATTACGATCTCTTTCCATAAAATAGTTTATGAAAAGTCTTCATTTCAAAAGGAATTAATAATTTATTCACTTAACTGCTTTGGTGGTTTTTTATTGCCCAAATTATCTAAATAAAATACTATTACCCAAAATAAAATTTAAAGTATGAAAAAATTTAATTATTTTATCATCTGTTATTATTCAATAATAAATGGAAGTAAGGAATGAAAAATTTAATTGCAATTTCAATATTAACTTTGATCGGTTTCAACGCTTTTGCTAATGATAATGCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2437-2587 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARN01000045.1 Gilliamella apicola strain N4 NODE_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2437 29 100.0 32 ............................. GGCAGGAAACTACGAGCGCTGAACCGTCGCTA 2498 29 100.0 32 ............................. AGCAGAATAATGGGCGATTTGTAACAATACCT 2559 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : AACTGACTAATTTCTATATTAGATTAGTCTAGAAAAGTATTTCTTATACATATAGATAAAACAGCTTTATTTGTAAATTAACCTAATTTAGGTTATTGGCATATGCATTAATTTATCATTTATCTATAATAATATATGGTTTTTTGTGTACCCAGTATGTACAGGGATAAACCGAATATGCCGAGCAGGCGAGAAAGCTGTCTCTGATGTTCCCTATATATACAGGGATAAATCGGGGATGCGTCAATATTACATAGCATTTTTTTGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTACTATCTTTTTAATTATATGAAAAATATAAACTTATCGGTAAAATTTCGTAGAATCTAACTTTAATTTCCATCAATTTTAATTAATCAAATAAAAACATAAGGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTGGTAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GCCCTAGTGGCGGTTTTTCATTGCCCTTAATTTTTAAATAACATACCATTACCTAAAAAAGGAGATGGTATGAAAAGAATTGCATTACTAGGATTGGTTTGTTTTGCGTTGTCTGGTTGTGGTGATGATGGTGATGATGGTGGCGGTAAAGTTACTAATGAGTTTTTGGTTGGTAAGTGGGAGTGTAAATTGGACGGTTACAGATCAAAAATGAAAAATGGAAAATTTACTGATTATGTTAGCGATGGGTTTAATATAATAAGGAAGGTAGAATTCAAAATAGAAAATAATAAACTGTATAGTATAAGTAAAACTGAAATGGATGGACTTAGTTTTTGGGAATCGAATGATTGGGATGAAAGTGATATAACTATTACTCATACGGGGCAAACAGTAGAGAAAAAAGAAAATAATTTAATAGAAAAATCAACCAATTCTCTAATTAAAAAATCACATGATACATATTTAATGATTGAGGAATATATTAAAACTCCAAATGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //