Array 1 44874-46305 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYAY010000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 356 A NODE_7_length_224994_cov_44.3724, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44874 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 44935 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 44996 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 45057 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 45118 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45179 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45240 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45301 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45362 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45423 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 45484 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 45545 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 45606 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 45667 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 45728 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 45790 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 45851 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 45912 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 45973 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46034 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46095 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46156 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46217 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46278 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62437-64340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYAY010000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 356 A NODE_7_length_224994_cov_44.3724, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 62437 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 62498 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 62559 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 62620 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 62681 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 62742 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 62803 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 62865 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 62926 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 62987 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 63048 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 63109 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 63170 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 63231 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63292 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63353 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63414 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 63475 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 63536 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63597 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63659 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63762 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63823 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63884 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63945 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 64006 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 64067 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64128 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64189 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64250 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64311 29 96.6 0 A............................ | A [64337] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //