Array 1 454414-455906 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUQD01000002.1 Salmonella enterica strain 15E059 NODE_2_length_635098_cov_20.99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454414 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454475 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454536 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454597 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454658 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454719 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454780 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454841 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454902 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454963 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 455024 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 455085 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 455146 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 455207 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 455268 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 455329 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 455391 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455452 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455513 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455574 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455635 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455696 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455757 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455818 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455879 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472038-474002 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUQD01000002.1 Salmonella enterica strain 15E059 NODE_2_length_635098_cov_20.99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 472038 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 472099 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 472160 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 472221 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 472282 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 472343 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 472404 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472466 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472527 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472588 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472649 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472710 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472771 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472832 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472893 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472954 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473015 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 473076 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 473137 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 473198 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 473259 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 473321 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 473424 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 473485 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473546 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473607 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473668 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473729 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473790 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473851 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473912 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473973 29 96.6 0 A............................ | A [473999] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //