Array 1 462657-461670 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMS01000004.1 Emergencia timonensis strain AM07-24 AM07-24.Scaf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 462656 33 100.0 35 ................................. TTTAGTCTCCATCGTTATCACCTCCATCAGGCGGT 462588 33 100.0 33 ................................. CAAATGTGTCCCTGCGTCCATATCCTGCAAGGC 462522 33 100.0 34 ................................. CTCACAGGCAAAATGCTGTGCATCGTTAGCACTT 462455 33 100.0 35 ................................. ACAAAGAATTGAGTCCATATGGACTAAGAGTGTGC 462387 33 100.0 35 ................................. GACCCCGGCTGCGATCTTAGAGAAGCCCGGTTTCA 462319 33 100.0 36 ................................. TTCGCCCGTGATTACGTAATCATTTTCTGTGTTTTC 462250 33 97.0 34 ..T.............................. TCTTCGATGTCAGCAGGGAGGATTTGCGGACAAT 462183 33 100.0 34 ................................. ACTTATACCGTCACCGACCTTCATGCGCACTTTG 462116 33 100.0 34 ................................. AACTCCATTCCATACACGATACCCGTTTGTTGCC 462049 33 100.0 37 ................................. CTCCGCCTAAAGCCATTTATTTCACCTTCCTTTTCAT 461979 33 100.0 36 ................................. ACCGAACACCGTAATCTTTGGGAAGTCAGCAACGGG 461910 33 100.0 37 ................................. TTGTTTCGGGTACTGTTGCAAGGATTTCCCATACCAA 461840 33 100.0 36 ................................. GGTGCTACGCAAATGCTGGGCGAAAATGAGGGTATC 461771 33 100.0 34 ................................. TGTATAAAGCGTCGCTGACCATCTATTATTATTG 461704 33 100.0 0 ................................. | TC [461681] ========== ====== ====== ====== ================================= ===================================== ================== 15 33 99.8 35 GTCGCACTCCGCATGGAGTGCGTGGATTGAAAT # Left flank : TGGAGAGCTATCCGCCATTTTTATGGAAATAAGGAGTGTGATATATGTTAGTTTTGATTACTTATGATGTGTCTACGCAGGATGGTGCCGGCAAGAGAAGGCTGCGTAAAGTCGCCAAGGAGTGCGTGAACTATGGTCAAAGGGTGCAGAATTCGGTATTTGAGTGCATACTTGATGCATCGCAAGCGTTACTGCTGAAAGACAAGCTTTTGTCGATTATTGATGAGACGCAGGATAGCCTCAGGTTTTATAATCTCGGAAACAATTACGAGACAAAAGTGGAACATTATGGAGCTAAAGAAAGTTATAAAGCAGAAGGCGTTTTGATGGTATAACCTTGGTGCGAAAGGCAAGTGAACATGAAATCCCTGGGTCTTTCGCACCTGTATTCTTGTAAGTTTAATTCCTTATGTGGAAATATATGTTACATATGGTTTGTCCAAATCTAAAAGTAATACAAATTAATGGGAATTTCTTTAGGAGATTGGCGTTAATTTGCA # Right flank : ATCATCCAGTTTATACAGCAGCACCAAATCACCTGCGCTACACTCTGCGCAGAGCAGAAGCATACATACCACCATATTGTGCTATATTAGAATACGAAATAAAAGGCATGGTATTAACTAACTGTTGGAACAAAATAGACACGCCTTTCACCAGATTTTCTTGCGTTTTTAAAAAATCTTTTTAAAGATGAATTGATTTTATGATCAATTCTTTTTCTATATCCAGTGACTTTCCTCTATCTCTTCCGCATGAAATCCTCATGTTTTGTAAACACTATCCATACGACAAATTTCGACAGCGTAGATTGTTTGGCATTTACGGTTGATGACAGGCTTGAGCTGTTCAATTGTCGTATTGGGCAAACTTTTTCTGCAATTATCTAAATGAAATGCAGACGAATGTCAATAAGCGTGCCTATTAGTTCAATTTTATCATTACGATCAAAATTGTATTGTTTTATGTATGAGAGGTGCATGGTATACGTATTGTTCCCCTTGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 495728-495089 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMS01000004.1 Emergencia timonensis strain AM07-24 AM07-24.Scaf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 495727 33 100.0 36 ................................. TTTTTCGCATTTTGATTTAATGTGCTGTACAGATAT 495658 33 100.0 33 ................................. TTGCCGTCGACCGCCCAGGGCTTTGCAATCAGT 495592 33 100.0 36 ................................. AGACTCGCCTCCCTGTCGCAGTCCTCCTTCGTACCG 495523 33 100.0 34 ................................. CTCGCCGATCTAGAACGCGGCAGCAAGGGTACGT 495456 33 100.0 35 ................................. CTCGAAGAAGGAGTCTACTCTAACGAAGAATTTAT 495388 33 97.0 37 ......G.......................... TTGTCACGGATGACCTGGTAAAAGATGCAGAGGTCGC 495318 33 100.0 35 ................................. AGACATACGACCAAGGGCAACACGGAAGTTGAAGT 495250 33 100.0 36 ................................. TTACCTTGAAAACAATTATAAGTCATGATTGATGAC 495181 33 97.0 26 ......G.......................... TCCGAATGTATTATCGCATGGAAACA Deletion [495123] 495122 33 72.7 0 .G........CTT.....A....A.G..A..C. | G [495109] ========== ====== ====== ====== ================================= ===================================== ================== 10 33 96.7 34 GTCTTGCTCCGCATGGAGCAAGTGGATTGAAAT # Left flank : AGAAAGAGGTGGGCATCGCCCATGTATTTCAGGACAATACCACATGCAGCGACTTGTTCTATTCCGGCCGGTTCGATTTTGTGGTCTACGAAAAAGTTGATGAGAATCACAAGCTGCCAGTTTTGGTCATTGAACTGGACGGACGGGAGCATTTCGAGGATGAAGTGGTAAAACGCCGCGACGCACAAAAGAAGGAAATCTGCCGGGCGCATCAAATGGAACTGATTCGGGTGGAAAATTCCTACGCAAGGAGGTATAATCATATTAAGGATATATTGGAGAACTACTTTAAGGCCCTGCGGTAACACAAAGAAAATACCAAACTGTTCTGTTTTACGCTGGTGCGAAAGGCAAGTGAACATGAAATCCCCAGGTGTTTCGCACCAAAATCTTTGCGCGTAAAATGACATAGATGGGTAATAATGGGAGATAGTTTGCTGTGAAAAGAGAAAAAGTGCTAAGAAATATAAATATTTCTAGAATATTGGAGATATTTAGCA # Right flank : TTGTCGACTATTTGCGCCAGTGGCAGCCTTTATCGATAATAGTTTATTTAAAAGCAGGAGAATAAAATCCTACAGTTAGAAACTATAGCGAAGTTAATATTAACAGGAACGCATGAAGAAGATTTATTTATAAAAGAAACAGGAGATTAATTATGAACGAAATCAAAGAACAATTGAGAATTTTTAACGAGGAGCGGGATTGGGACCAGTTCCATTCACCGGAAAATCTGGCAAAATCCGTCGTCATAGAGGCCGGAGAACTCTTGGAATGCTTTCAGTGGAACAACGACTATGACCAGAGAGCCGTCAGCGATGAAGTCGCAGATGTAATGATGTATTGTATCATGTTAGCGGACAAAATTAATATTGATCTGAAGGAAGAAATTCTTAGAAAACTTGAAGCCAATAAGAAAAAATATCCTGTTGAAAAATGCAAAGGAAGCAGTAAAAAATACGACAAATTAGGAGACGAATGATGGCTGTAATAGAAAGTGTAGAAT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGCTCCGCATGGAGCAAGTGGATTGAAAT # Alternate repeat : GTCTTGGTCCGCATGGAGCAAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 3 535411-535119 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMS01000004.1 Emergencia timonensis strain AM07-24 AM07-24.Scaf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 535410 31 100.0 35 ............................... ACCCGATAGGATACGGGGTACTCCTCGTATGTCTC 535344 31 100.0 34 ............................... CGCAGACGGAAGAAACACTCAATGACTTGTTTGC 535279 31 100.0 34 ............................... TACGACTTGTGCGCATCCAGCCGTAGTCCAATAT 535214 31 100.0 34 ............................... AGGGAGGAGACCGAGGGGCCTCCGCCCATTATTT 535149 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 5 31 100.0 34 GTCGCATCCTCATGGATGCGTGGATTGAATT # Left flank : CGCCTATGATTACCATATATTGC # Right flank : TCACAATGATCTCGGGGGAAGGGAGGGCGCTATATAACAAAATTTCTGCAATGATACGACATCAAGTAAAAGTATAGTGCAAAAACATAAAAAAAGGTCAAGTGGGTATCCTTGACCTTCTTTCGCTATTAAAACTGCGTAACCCCCAAGTTACATTTTAATAGCTATTGGTGTTTGCTTTGAACAAAAGCAATTTATAGATTGTGAGACCAGTGTAATATCTGCAATCTATAATCATATTATACAGAAAAATCTAAAAAAGAAAAGACCATGTCTAAAATTGGAACATTTTGTTTGCATTTGACTACATAGGATTGGGTTTATTTGTATAGGTGACAATAAAAATAATTTGTGTTAGAATAATTACATTGATAAAACAAGAAAGGAAAGAAAACATGAAAAAACTAATGGCGTTAGTATTATCAGTTGCGATGGTGATCTGTGCATTGCCAGCGGCAATTTTTGCCGATGATACAGCAGCAACTGCAACTGACTTAAGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTCATGGATGCGTGGATTGAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 25-447 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMS01000014.1 Emergencia timonensis strain AM07-24 AM07-24.Scaf14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 25 31 100.0 35 ............................... TTTGGTAACCTCGCAGAGATCATATCTGCCATGAC 91 31 100.0 34 ............................... TTCGATATAGCGGGATAAAGCTAATCGTTCCGAC 156 31 100.0 33 ............................... AATTATGTACCTTTTTGCTCCTAATGTTTTAAA 220 31 100.0 34 ............................... TGACGATATGCCTAATAATGGTAATAGATATGAT 285 31 100.0 33 ............................... TAGTTTACCTTTGCCACTAATTCATCATGTTTT 349 31 100.0 37 ............................... CAATCTCCCATCCGCTTATAGTAGACTGCGGCAGCGA 417 31 96.8 0 ....................C.......... | ========== ====== ====== ====== =============================== ===================================== ================== 7 31 99.5 34 GTCGCATCCTCATGGATGCGTGGATTGAAAT # Left flank : CGCCTATGATTACCATATATTGCGG # Right flank : TTCATAATGATTTTAGGGGAAGGGAGGATAGAGGCGTGTGATTGACAAAGAAAGAATAGATTTATAACACAAAGTATAGAATAGAAGGAGTATAAGGTCAGATATATTTATCTTGGGAAGATGATGCCTGAAGTGTGCTTTTGTGATATAATCAAATTACAGATAGGATGCGGAGGAGAACGATTGATGTTTTATACTTTGATGAACATGGGAAGAGAAATAGTCAGATTCAGGACTTACAGAAATGAATATGGGACGGTTCGTGCAGATGATGTCAAGGTATTGCAACAGGATCTGCTTCCGCAGGAATACACAGGTGATGTCATCCGCTTTATTGAAGGAAGGAAAGCGCCAAAGCACAGAAAGCATGTTCAAAGCATATTGAAGCAGTTGGGAGCGGAAGATGTAGAAGGGTTTATCAGAGTAAGCAGTGCAGCATCTCTTACAGATACGTTCTGGGTAAGAGATGAAGAAGCACCAAAAACCTGGGAAGAGGTATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTCATGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //