Array 1 82638-80293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSXK010000006.1 Pantoea agglomerans strain Pa21-5 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82637 29 100.0 32 ............................. GAAAGAGCAAGGCGCATAAAGAAACGCAGGAA 82576 29 100.0 32 ............................. GATGTCGGTGAGTTTTTCACTTCGCAGAATCC 82515 29 100.0 32 ............................. CATCATGCCGTTTGTCAGTGGAGCTAAATATC 82454 29 100.0 32 ............................. ACACTGGACTTCTCTGAATTATCAAATGAGAG 82393 29 100.0 32 ............................. CATCATGCCGTTTGTCAGTGGAGCTAAATATC 82332 29 100.0 32 ............................. ATATTGTCGCATAGGTTACCTGTGCAGCTTTA 82271 29 100.0 32 ............................. CTGCTTGAAGAGATGGATTTTAACGAGATAGT 82210 29 100.0 32 ............................. CCTGCATAGCGCGTGGCGATAACAGTCAGGTC 82149 29 100.0 32 ............................. GCAGAATTGCTTCAGCTTGCGGGTGATTTCGG 82088 29 100.0 32 ............................. TGCTGCTGAAGACATGAGATAGTCCTTATTTG 82027 29 100.0 32 ............................. GCCAGTCTCTGATGCAGTCATCAAGCCCATCG 81966 29 100.0 32 ............................. ATACGGCTGAAACAGCACTGAGTGATTTTGAC 81905 29 96.6 32 ...C......................... CCCGAGGGCCGCGATAATAGCGATCCCGGTAA 81844 29 100.0 32 ............................. TCAATAAATTTGGCGCAACGGATAACAGCTAT 81783 29 100.0 32 ............................. GCTCTTAAATCTCTTTTTTTAAATAAGTCTGA 81722 29 100.0 32 ............................. TAAACACGATGATGGCTCCTCGCGGAGTTGAA 81661 29 100.0 32 ............................. TGGACATCAGACCCGACGGTCGCAACGGAAAG 81600 29 100.0 32 ............................. AATGACCAGTCCATGCTTCGCCAGCATTGGAG 81539 29 100.0 32 ............................. ATGAGGAGCTGGCCAGACTTTATAACGCGGGT 81478 29 100.0 32 ............................. CCGGTTAAACGCGTGCTGATTAACGATAACAC 81417 29 100.0 32 ............................. GTTGTGCTGGAAAACGATTACCCGGAAGCAGA 81356 29 100.0 32 ............................. CCGGTTAAACGCGTGCTGATTAACGATAACAC 81295 29 100.0 32 ............................. TTCAGCCAACGAGTGAGACGGTTTCTGCACGT 81234 29 100.0 32 ............................. TAACAGACAGATTCTTGAGGGCAAATGCAGGA 81173 29 100.0 32 ............................. GTATTCCCATGATTTCAGAGGCTTGCCGTTTA 81112 29 100.0 32 ............................. GATTGCAGACGGCCGGTAAAACAACTGAGAAA 81051 29 100.0 32 ............................. GCACCGAGATCGGCAATCTCAAAGAGCTAAGG 80990 29 100.0 32 ............................. TTGGTATTCAGCCTTTCTGACTGAATGGTATG 80929 29 100.0 32 ............................. ACGGCGGATCAGCCTGTTTTCGTCTGGTAGAG 80868 29 100.0 32 ............................. ACAGCACAATCCAGCCGGTGAACGTGTGCGAC 80807 29 100.0 32 ............................. GAGGCAAGATTCTACATAAACGCTTAATCATG 80746 29 100.0 32 ............................. GTGTTAGGGCTTAGTCAACGTGCGCTGGGTAA 80685 29 100.0 32 ............................. TTGCTGGCCCTCAGTGCTGCAAACCATAACGT 80624 29 100.0 32 ............................. GCGTCGTTTACTATCAAGGCTTCGGTGTGCGC 80563 29 100.0 32 ............................. GCACTGGACGGCAGCACAGAACACCAGAGCAA 80502 29 100.0 32 ............................. TCTTTGCATTCCAGGCGGATGTCATAACCGGC 80441 29 93.1 32 .............TG.............. TAGTCAGTGGCCGGTGATGGAAAGCCCATGTC 80380 28 93.1 32 ..........A-................. CCGTGGTGTTGGCGTTCTGCTGTGACATGTTG 80320 28 82.8 0 .........A............-.C..TC | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTAATTGAGGATGTGCTTTCTGCTGGTGGTATTACACCTCCACCACCACCTAAGGACGCTCAGCCGATTGCAATCCCTGAACCTGCCCCTTTTGGTGATGCCGGACACCGGAGTGCGTGATCATGAGCATGTTGATGGTCGTCACTGAGAATGTACCCCCCAGGCTAAGGGGCCGGCTAGCTATCTGGTTACTTGAGGTCCGCGCCGGGGTTTATGTTGGTGATGTATCTCGTCGTAGCAGAGAGATGATCTGGCAACAGATTAGCAGGCTATCCGAAACGGGCAATGTCGTAATGGCATGGGCGAGTAATAATGAATCTGGTTTTGAGTTTCAGACTATAGGTGACAATCGGCGTTTGCCGGTGGAGATGGACGGTATCCGGTTAGTCTCTTTCCGACCTGTTGATAATCAATGAGTTAGCGATCTTTAAAAAATCAGATATTTTGGTAGAATTGGCAGTGGCAAAAAAACTGTTATAATTCAGTTGGCTACGTTTAGA # Right flank : CGGCAAATCCCTGCCGATATTATTTTTCAATGCCCGGTCTATCCTTCACAAACCACTACAAATCCTTCACTCAGTCACACTCTTCTCCTGCGCCACCCGTTCAATAAACATCTGCGCCAGGGCAGTAATGGCGCTGTTGCCGGGTAGTCTTTCTTCATTGATATACATCACCAGCGAACTACTGCGTCGGCGGCCCTGTAACAGCGGCAGGGAACGGAGCTCACCGCTCTCTAACTGCGCGGTGATATTCTGTTCCGGCAGCCAGCCATAACCTAACTGATGCTGGACCGCTTCAATGGCTGCCGACAGCGTCGTGAAGGACCAGTTCTCCGCCTGATCGCCATTGACCTCTGACTGCTGCTGTTGCTGACGATCCAGAATGGTAATGCAGGGCCAGCGTGCCAGCGTAGCAGCATTAAGCGGGGCGGATTCGCGGTGCAGCGGGTGGTCGCGATGGGCGACGGCGACGAAATCGACACTCATCAGGCTTTCGCCTGCTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //