Array 1 4897498-4895219 **** Predicted by CRISPRDetect 2.4 *** >NC_015563.1 Delftia sp. Cs1-4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4897497 32 100.0 34 ................................ ACGCTCAAGGGTGAGGGCTGTACGCATGCCCGTC 4897431 32 100.0 35 ................................ AACCAGGTCGAACACCCTGGTGCGTCGTAGCGCAC 4897364 32 100.0 34 ................................ GCCCGATGTACGAGGACTGGGTGACGGATGCCAA 4897298 32 100.0 35 ................................ GATCAGCCGGCCATGAGCGTGCATGGCCTCATCAG 4897231 32 100.0 34 ................................ CCCACTTCTTGAACTCTTCGGACGTGCCGAACTT 4897165 32 100.0 34 ................................ ATCTGCACACAGCCCGAAATGCCCTGCCAGCCTG 4897099 32 100.0 33 ................................ CCCATACGGCACCCGCTTATGACCAGGTGACGG 4897034 32 100.0 34 ................................ GCCCGATGTACGAGGACTGGGTGACGGATGCCAA 4896968 32 100.0 33 ................................ AACTGGCTGAGCAGCACGACCGTGATGCGCAGC 4896903 32 100.0 35 ................................ GTGGTGCGCGGCCCTTGTGGCAGGATCGTGCACAG 4896836 32 100.0 34 ................................ GCCCATGAGGCACTGATCTACGGAGTCGCCGCTT 4896770 32 100.0 34 ................................ AGGTCTACGCTCAAACAGAAGCGCCTCCACAGCC 4896704 32 100.0 33 ................................ TTTGGAGCCGAAATAGAACGACCTACCCCGGCC 4896639 32 100.0 34 ................................ CACCGCTTGCCTGACTCGCTGTAGCGTCTGCTGT 4896573 32 100.0 34 ................................ ATGGCCCGCGTCAGGCGCATCGGCACCAGAGCGA 4896507 32 100.0 34 ................................ TTCCTAAAGGGACCGCTGATGACGTTGCAGAGGA 4896441 32 100.0 34 ................................ ATTTCCACAAAAATACGCTAGGAGAACGTATGCG 4896375 32 100.0 35 ................................ CACTCCAGCGAAGCAGAAGATTGGCAGGTGCTGCA 4896308 32 100.0 33 ................................ CGGCCTGACCCGCACATCCCGACGCAGGGCGAC 4896243 32 100.0 34 ................................ AACGTCGATATCGCCTGCGACATTTGCAAGCTGG 4896177 32 100.0 36 ................................ AAGCCTGAGATTGACGGCGAGGGCTGGCTCGTCAAG 4896109 32 100.0 33 ................................ GAGATGGGTAAGCCGGTGGACCTGGGCTGGTTC 4896044 32 100.0 35 ................................ TGCACTTGGGCGGCCAGTTGGCACAGGGGGCAATC 4895977 32 100.0 34 ................................ GTGCGCTCCATTGCCCTCACCGGCAATGCTTCGG 4895911 32 100.0 33 ................................ TTCAGCATCGTTCTGGCGTCATGCACCAGTTCG 4895846 32 100.0 33 ................................ CGTGCTGCGCGCGTCAAGACCGTGACCGCGGAC 4895781 32 100.0 35 ................................ TGGCTGGATAGCCGATGCTAGGCGTCACAGCAGGA 4895714 32 100.0 34 ................................ AGGAAACGCAGGTCTGCCACGTCGATCATCGTCA 4895648 32 100.0 35 ................................ GTCATCGAAGACCTGGGCAAGGCCGTGCTGATCGA 4895581 32 100.0 35 ................................ TACCAGGGCAGCGGCGTGCTGGCCCGCGAAACCAG 4895514 32 100.0 35 ................................ GGCAGCGGCTGGGTGCCGGGCAACCAGCTGCGCAT 4895447 32 100.0 34 ................................ TTCTCCATCGAGCGCACGCGCACCGATGGCGGCG 4895381 32 100.0 35 ................................ CAAAGAGGGGGTGCTATGGGCCTGTTTGTAATCAG 4895314 32 100.0 32 ................................ TCGCCAAAGCTGCCCGCGACTCTCCCGCCTCC 4895250 32 90.6 0 ..........A.......AT............ | ========== ====== ====== ====== ================================ ==================================== ================== 35 32 99.7 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GGCGTGAACTACGTGACCGGCGACTACTCGCGCGGTGTCAGCGGCTTCTGGGTGGAAAACGGCGAAATCGCCTTCCCCGTGCATGAGATCACCATCGCCGGCAATCTCAAGGACATGCTCAAGGGCATCGAGGCCGTGGGCGCAGATGCCTACAACTACGGCGCCAAGACCGTGGGCTCGATCCTGATCAACCGGATGAAGGTGGCGGGCAGCTGATCGGCTTGCGGCTGCGCATGCTGATGAAGAGCGGCCTGAAAGGCCGCTTTTTTGTGGGCACCCAGTCACCGCGTGCCCCGGCCGCAGTTGGCCGCACCAGCTCGCGTCCCGCGAACCCCAAGTGACCTTTGTCCTCCCCTGAGGTTCGCATTTCTGCAAGCCGTTGTTTTTGTTGAGGCATCACTGCGTCTGTCGTGGTCCTTGCCGTTTTTTCGGGACAGAGCGCGCAGGTTCGCGATGGCGAAGCTTTTTTTGCAGTGGTACGGCTGGGTTATAAGCATGCC # Right flank : ATGGCCATCAAGCGCGAAATGACGGTTCGTGCAATCGCTGGCAGCCCGATGCCTGCATGTCGGCAAGGCGCTGTCCTACCGGATGTGCAGGGTTTGGGAAGGCGACGCAACTGATTCAAATTGTCAAATTTGTTCATGAATGTGTTTCTTCCGTGCCAGCAGTCTGGCCGGTTTGCGTAGGTGGTTCGAGGGAGAGCGACGTGGGTTTTCTGAGGCGTATGAAGTTGGGAACCATGCTGGGCATGGGTTTTTTCGCGGTGATCGTGGTTTGCGTATGCGTGGCGGCCTTCGGCTGGATGAAGTTGCGTGACCAGGGCGAGCAGCTGCGCGTGCTGGCCGAGGACCGCATGGGCAATCTGGCCCGGCTGCAATCGCTCAAGGACAACGCCAATGCGTCGGCGCGGGTGGTGCGCAATCTGGCGCTGATCACCGATCCGGCGCAGATGGCCGAGGAGAGCCGCCGGCTGGATGAGGTGGTTGCCAGGAACGGCCTGGTCATG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 5967068-5963276 **** Predicted by CRISPRDetect 2.4 *** >NC_015563.1 Delftia sp. Cs1-4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5967067 28 100.0 32 ............................ TTGTAGAGCGCCTGGGCCATTTCCAGCAGGCG 5967007 28 100.0 32 ............................ AGACCAGCAAAGCCAGCGACTATGTGATCCAG 5966947 28 100.0 32 ............................ AGCATGAAGGCCGGCGCCTCAGCAATCGGCAT 5966887 28 100.0 32 ............................ AGCCACTGCGCTGCGGCAAATGCCTTGCTGGC 5966827 28 100.0 32 ............................ TTGTAGATGCCGTCGCTGGTCTTCTCGACACA 5966767 28 100.0 32 ............................ TGGCCGCGCGCCCGGTAGTCGTTCCAGTCCTT 5966707 28 100.0 32 ............................ AACGTGGACCAGCTTCCGGCCATCTACGGGAT 5966647 28 100.0 32 ............................ ACTGCATGTGCTGAACGCCTAGGCCTGATTCG 5966587 28 96.4 32 .........T.................. TGCTGGAGATCACCAGTGTGCGCGTGGAGCGG 5966527 28 100.0 32 ............................ TCATAGAAGCCGTCATCTCCCATCTTTGCCGT 5966467 28 100.0 32 ............................ TGAAAACAGGATCGGTCGTTCTTTCATGGCGT 5966407 28 100.0 32 ............................ GATGGAATCGCGCGAAAGTACGCAATTGCGGC 5966347 28 100.0 32 ............................ ATTGAATATTGGGCCGAGAACTATGCGACTGC 5966287 28 100.0 32 ............................ GCTTGTTGGGTCGTATTCACCAGCCATGTTTT 5966227 28 100.0 32 ............................ TGTACGGCGACGCCCCTCTGCCTGAGCTGGCG 5966167 28 100.0 32 ............................ CCCAGCGGTTCAGGTTGCCGCCTGAGGAGCTC 5966107 28 100.0 32 ............................ TTGCTGCCGGCCTCAGTCGAGTAGTCGTAGAA 5966047 28 100.0 32 ............................ ATTTTCAGGAGCATCACAAATGAGTTCCTGGA 5965987 28 100.0 32 ............................ TTCCCGCGCGGCAGGCCGGTGGCTTCGGCGAT 5965927 28 100.0 32 ............................ TACAAGCGGCCGATTCTGAGCGTCCCCGTATC 5965867 28 100.0 32 ............................ AGAATCATGAGCGGCATCAGCAGGAAGGCCAT 5965807 28 100.0 32 ............................ GTGCGGCTGATTGTGTGCGACGGCCATAGCGG 5965747 28 100.0 32 ............................ ATCGATCAACTGCAACTTTTGGAGGCCGCTCA 5965687 28 100.0 32 ............................ ATTTCGGGTATGTGAGCAGCGTCGGAAATTCT 5965627 28 100.0 32 ............................ ATCTGCCTGGGCCAGCGTCCCATCGTGCACAT 5965567 28 100.0 32 ............................ AGCGTGGCAACGGCCATGGCCTTGTCCTTGGG 5965507 28 100.0 32 ............................ AGGATGCATCGTGAGAACTCAGCGCTGTCTTC 5965447 28 100.0 31 ............................ TTGCGGCTTGCGCGCGGCGATGGGTCGAGCC 5965388 28 100.0 32 ............................ TCGGTCAGCGTGTATCCCTCTCTCTCGCTTGC 5965328 28 100.0 32 ............................ AGGGGGCGGATGAGCCACATCTGCTCATACTC 5965268 28 100.0 32 ............................ TCTACGCATGCGACCTGCGCGCGCTCCTGGCT 5965208 28 100.0 32 ............................ AACAAGGTGTTGGAAGCCGCCGGCGGCAAGTG 5965148 28 100.0 32 ............................ CCGAAGTGGCTGCGCGTGCCGGTGCAACGCTA 5965088 28 100.0 32 ............................ AATGATGACCCTGGGCCAATTCGTGTTTGGCC 5965028 28 100.0 32 ............................ AAACGAGCAGATGAAGCTGAGCCGAATGGGCA 5964968 28 100.0 32 ............................ TTCGACGGGATCTTTGACGGACTGTTCAAAGA 5964908 28 100.0 32 ............................ CTCAGTGAATGCCCGCTTTGCCCCTGACCCTC 5964848 28 100.0 32 ............................ AAGGTCTTGGGGCCGAGGATGCCGTCATCAAC 5964788 28 100.0 32 ............................ TTCCAGATCGACGCGGCGAACGGCATCCTGTC 5964728 28 100.0 32 ............................ ATCCCAAGTTCTGATGACGTGCGCACTCTGCT 5964668 28 100.0 32 ............................ AACCACCGGAGCCATCCAATGACCGATCTCGC 5964608 28 96.4 32 C........................... TTTTGGCCGTCCGAGCTACCCGGCGCGCATGA 5964548 28 100.0 32 ............................ GCTTGGAATTCCTGTGGCGCGAGGGCAAGGTG 5964488 28 96.4 32 ...................A........ GTGCGGTCCACGACCTCATCGTTTTCCATCTC 5964428 28 96.4 31 ............A............... TCCCACGACCATCCGCAAACTTGATCCCCAA 5964369 28 96.4 32 ............A............... TTTGCGCCTGGCGTTGCAAGATCAGACGGCTT 5964309 28 96.4 32 ............A............... ATGGAAATCGCCAAGATGCCCAGCCAAAGCGA 5964249 28 96.4 32 ............A............... ATCGCAGCGCCCCGGGCTCCCGTCGATCCCGC 5964189 28 96.4 32 ............A............... CTGGACCAGGCGATCTACCTGCGCCGCGCCAT 5964129 28 96.4 32 ............A............... AGCAGGCCTGGAGCGAACTGAAACGCCGGCTT 5964069 28 96.4 17 ............A............... TGGGTGGGCAAGGCCTG Deletion [5964025] 5964024 28 96.4 32 ............A............... ATGAAGGCCGGACAGATCGCGGAGAGCATTGC 5963964 28 96.4 32 ............A............... ATGGACGAATCAAAGGCTGTGGTGCGCTACGG 5963904 28 96.4 33 ............A............... AGGGATGACAACGTGATGCACGGCGCCGTCGAT 5963843 28 92.9 32 ........T...A............... GGCCACGGCCGCGCGAGGTTTGGGCTTCTGGC 5963783 28 96.4 32 ............A............... TGGGCTGACGCCAAGGAATCCGAGCTCCGCAC 5963723 28 96.4 32 ............A............... TGAATCCGGCCAAGAAGCAGGCCTATCTGGTG 5963663 28 96.4 32 ............A............... TCGTTCAGCTACGGCCCGTATCGCTTGGCCTG 5963603 28 96.4 32 ............A............... ATGACGCAGTGTGCCGCGAACCCTACGCCATG 5963543 28 96.4 32 ............A............... AGGACCGCGACATGCTGGTGATGCCGGCGGAT 5963483 28 96.4 32 ............A............... ACTGCCACACGATGTAGTCGATCAAAAAGAGA 5963423 28 96.4 32 ......................T..... ATCCGCCTCCAGGGTAACGCCATGCAGCACAG 5963363 28 96.4 32 ...................A........ ACGGAGCCGCCCGGCGCGGGGGGGGCGCTCAG 5963303 28 92.9 0 .....T......T............... | ========== ====== ====== ====== ============================ ================================= ================== 64 28 98.6 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CCGCGCTGCGCTGCCTGATGGAACAGCCCTGGCTGCAGGGCATGCGCGATCACGTGCAATGCACGCCGCCAGCTTTGGTGCCAGAGGGCGCCGTGCCCTACCTGGTGCAACGCCGGCAATTCAAGACCAGCCCCGACCGCCTGCGCCGCCGCCGCATGCGGCGCAAGGGAGAAACCGCCGAACAGGCCGCGGCCGCCATCCCCGACAGCGTGGAGCGCACCCCGGACCTGCCCTACGTTCAATTGCGCAGCGCCAGCACCGGCCAGCCGTTTTGCCTGTTCGTGGAGCAGAAAGCGGTGCAGGGCACGGTGGGTCAGGAAGGCTTCAATACTTATGGGCTGAGCCTGGGAACTGCTGTTCCCTGGTTCTGACCCTTTTTCTGGCGGCCTGAAGACTGCCTTGTAAATCAACAGCTTGGCGGATGCCCCGGAATTTGGGGTGTTTGCCTGCTGGAGGTGAAAGCTCTTTCAAAATCAATGGATTGGGGAATTTTTTGCCTT # Right flank : GGCTGCTGACTTGGAGGCGACAGAGAAGCCTCTGCATTCAACCTTCCGGGCCATGCTCCGCGTATTCCACAAAGGACGGTGCTTCATCAAACAGTTGCAAGAGCAGTTTGAGGCGCCGGGCGTAGAGGCTCTGTGGCCGGTTGAAGGCCTGGGCTGCCAGGGCGATGGCTGCGCGGGCGAGGTACCACTCGTTGTCGAATTCGCTGGCGTCCTCGAATACCTTGTGCCGAATTTGCCGGATGTGATTCAGCGCCAGGTCTGCGGCCAGGTCCACCTCTACATCCGCGTCATGCCAGTCCATGTCGGCACAGCGTGTTTCGATCAGAGCAACCAGCCCCATCTCTGCGCGGGCAATGGACAGGGCGATCATTTGCTGCATGGTTGGCCAGGCAGCGGTGTCCATCGTGCAGGGCTTGTTCGTTGAGTGCCGTGACGCAGCCATATCGATTCCTTTGTCCGTCGCTTCAATGACTCGGGCTTTCTATGCACGATCTATGCAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //