Array 1 1293256-1293001 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022571.1 Prosthecochloris sp. GSB1 strain TY Vent = GSB1 = Ty-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 1293255 35 100.0 40 ................................... ATACCACCAGGATACGTGATCCGTATCTCGAAACAACGCT 1293180 35 100.0 39 ................................... CAAAAGAAACATATTCCTCCATCGGGATTTCCTGACATC 1293106 35 100.0 36 ................................... TGATACGGATTCGGACGGTAATATCTGAGAAAGCGA 1293035 35 82.9 0 ............................CA.GTGG | ========== ====== ====== ====== =================================== ======================================== ================== 4 35 95.7 39 GTAGGACGACCCGATTAGCTACAGGGGATTGCGAC # Left flank : TTAAGTGAAGACCCGCAAGCGCGTAGGGGATTGAGATCTGCCAAGCTGTGTTACCGCAAGAACGACACAGTGAAGACCCGCAAGCGCGTAGGGGACAGCAGGGATAGTTGGCAGTGTGCAATTGGTGGTTGGCTGTGTGGGGAACACGGCTGCATTGTCGGGCTGTAGGAGCGAAAGATCTTTCGCCCGCTTTCTTGCGGATTGTCAGGCATGGCTCAAGCGACTCAAGCGAGGCTTCGAGGGCCGAAAAGCCGAAGGTTCGTTTCGTGTTGACCATATAGCGGCGTTACAATTCTTGTAACGTATTATATGGCAGTGGATTACGGGGATTTTTGGGCATCGGTGAGCCTTGGATGTTGCGTAACGTCTTTCTTTTCGGTAAGATACGAATGGAGGTAAGGGTGAAATTCGGCTGTTTTTGCGTTTCATTCGCCGATTTTCCGGTGAGCCCTGGATTTCGGGCTGTGAGCCCTTGCCAGACAAGCGTTTCCAGAGGTAGA # Right flank : GGAAAGTCGGTAGTTTGCAACTGGCGGTTGGCAGTATTAAGATGCTGCTGCAATGTGGTGGTGTAGGGGCGATCCTGTGTGTTCGCCCTAATGACATTCGCAGCGTAGGGGCGAAACATCTTTCGCCCTTGTGGAGGGCAGAAAAAGGCCTGAAAGGAAGGACTGCCAGCGAAGAATGAGAATACAGCCCGCTCGGTTGACCGGATTGCAGGTCAAAGAAGTTGTTGACCGGTTGGTTTGTATGGCGCTATGGCGGTGAAAATGTCCTGATGAAACGAGGGGAGATGTTTCAGATTGAATGAATCAAAGTTGATGGGGGGATACATCAGGTTTCAGGGTGATGGTTCAGGGCTCCATATTCCATATTTCCCGATCTGAAACCTGCAGGGAAGGGATGTGACCGCGCTTCCTGGTTTGAAACAGAATGCGTTAAAAGCAACATGCTGACCTGCATGACGGTTTACAGGGTTGCCGGATCGCCATTCTCGTCCGACGAGCGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGACGACCCGATTAGCTACAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1295040-1293654 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022571.1 Prosthecochloris sp. GSB1 strain TY Vent = GSB1 = Ty-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1295039 32 100.0 34 ................................ CCCGCATAACTGGAAAATATCGTCCGTAGATCTG 1294973 32 100.0 36 ................................ CATGAGTCAGTCAGATTTATTTATTAATTTACAACG 1294905 32 100.0 37 ................................ CCTGCCTGTAAATGGCGAGCTTGTGCGGATGCGCGGA 1294836 32 100.0 35 ................................ CCGGACAACGTCTGCAACGACAAAACGCCCATCTG 1294769 32 100.0 36 ................................ TTTCGATAAGCTGCTCTTTTGTGCGTGGCGCTGCGG 1294701 32 100.0 35 ................................ TTCGCCTTATTGATCGCCGAAGTGTAGCGGATTGA 1294634 32 100.0 36 ................................ TGGCGATTTTTCGCCCGTCTCCGTAGCGGAGCCGTT 1294566 32 100.0 35 ................................ TTTATTTCGTCAATTCGCGCATTAAGTTCATTGAG 1294499 32 100.0 36 ................................ TTGGCCACATACTCGTTGTGCTTTTGGATTGCATCG 1294431 32 100.0 35 ................................ ATCAACGTGATCGCGCTATTCATCAGCGCGATTCC 1294364 32 100.0 36 ................................ GCTGAATACTCACTACGCTCCAACCATGTATCAAGG 1294296 32 100.0 37 ................................ CGGCGATGTTGCGGGAATGAGTGAGGCCGATCTTCGT 1294227 32 100.0 35 ................................ CAGTGCCGGTGCTGTCACCATTGATACCGATGGCG 1294160 32 100.0 38 ................................ CTAAGTCTTGACTCAAGGCTCTTTATCGTTCTGCCCGC 1294090 32 100.0 34 ................................ CATGTATTTCCGAGCGGCGGGGCGAAAGGCATTA 1294024 32 100.0 34 ................................ CGGTGCGACACCGGGGGTGATTGATGACGTTGCG 1293958 32 100.0 37 ................................ CTGCGCCGCGTAATCCCGGTAGTTCATCGCTCAACAA 1293889 32 100.0 36 ................................ GCGCTTGATCGCCGGATCCTCGACTACCGGTTTGTT 1293821 32 100.0 38 ................................ GTCAGTAGCTTGTGTGTTTGAGGGATAAGAGCCGTTAA 1293751 32 100.0 33 ................................ TCTGCCAAGCTGTGTTACCGCAAGAACGACACA 1293686 32 90.6 0 ..........................CA...G | C [1293656] ========== ====== ====== ====== ================================ ====================================== ================== 21 32 99.6 36 GTGAAGACCCGCAAGCGCGTAGGGGATTGAGA # Left flank : CAGAACCGTGGTGCAGGCCGTTCTCGCGTAGGGGCGAAAAATCTTTCGCCTGTACTGACCACACCGATCAGCCGAAACACCCCGTCCGGTTTGTATCCTGCAGGTGCAGCCCCTTATGCTTGCTTACGCCGTTGGGACGGACATCGTCATCGTACGGTGTTCAGTCCGATCCTTGATGCTTGTATCAAAACGTGCATTTGACGAAATTGGATCATGGCGAAGACGCCTGTTTCCGCTGTGTCATCGGGCGAACGGGAACCGAAAGCTGTTCTTGCTGCCCATCCGGTAAACCGTCAGTCAAGACGTATTCCGAAAACAGGTTAGGGATGCCTGCCTTTGAACTCCGGTTCGCGAATTGACGCAAGAGCAATGCATGAAATCGGTTATGGGTTTTTCGGGGATGACGGCAGCGGTGCCCAGGGCCTGTCGGTCGCCGAAAAAAGGAGGTTCGCGCAATCATGCCCGGAAAGCCGCGCCGGACAAGGATCGTAAAAGGCACA # Right flank : GATAGTTGGCAGTGTGCAATTGGTGGTTGGCTGTGTGGGGAACACGGCTGCATTGTCGGGCTGTAGGAGCGAAAGATCTTTCGCCCGCTTTCTTGCGGATTGTCAGGCATGGCTCAAGCGACTCAAGCGAGGCTTCGAGGGCCGAAAAGCCGAAGGTTCGTTTCGTGTTGACCATATAGCGGCGTTACAATTCTTGTAACGTATTATATGGCAGTGGATTACGGGGATTTTTGGGCATCGGTGAGCCTTGGATGTTGCGTAACGTCTTTCTTTTCGGTAAGATACGAATGGAGGTAAGGGTGAAATTCGGCTGTTTTTGCGTTTCATTCGCCGATTTTCCGGTGAGCCCTGGATTTCGGGCTGTGAGCCCTTGCCAGACAAGCGTTTCCAGAGGTAGAGTAGGACGACCCGATTAGCTACAGGGGATTGCGACATACCACCAGGATACGTGATCCGTATCTCGAAACAACGCTGTAGGACGACCCGATTAGCTACAGGGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAGACCCGCAAGCGCGTAGGGGATTGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //