Array 1 72780-72928 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGQ01000014.1 Streptomyces sp. NRRL B-3253 contig13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 72780 27 100.0 34 ........................... CCCCGACCGTCCGAAAGGAGTGCGGCTCCCGGTA 72841 27 100.0 34 ........................... CTCACCCTCGTGGGGGTCGCCGGAAATGCCACCG 72902 27 85.2 0 .......T............T.C.T.. | ========== ====== ====== ====== =========================== ================================== ================== 3 27 95.1 34 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : GCGATGAGCCTGCTCCGAGCAATGGACATGCCGCTCTCGCCACGCGAGGTGCGGGTGCTGAGCAGGGCCGCGCAGGGGGATTCGGTGGCGGAGATCGCCCGGGGGTTGTGCCTGTCGCACGGGACGGTGCGGAACTACATCGCTTCGGCTACGCGGAAGGTGGGGGCGAGGAACCGGGTGGATGCGATTCGGATCAGCCGGGCGGCGGGGTGGGTTTGAGGGGGGGTGGGATTGAGGGGGCTGGTGGGGGCTCGGGTGGTACGGGGGTGGGGTTGGGACTTGGCGGGTGGGGTGGGGTTGGGTCGGGTGAGGCTGAGGAGTGGGGTCGGGGTGTGAGTGGCTGGAAGGGAGGGGTTCGCGGGAGATCTGTCGGGTTCAATGGGGGGCGGGTGCTGGGTGAACACCATGGAGGGGACATGAGGCATTCGCCCGCATTGCCGGAATCTTTGAAGCTTGCGGGAGAGAGTGACTGGGCTGAGTGAAACCCCAGGTCAGCGAGA # Right flank : CCCTCCCGGCAACCGCTACTCCCCGCCCACGCCTAGGTCGACGCGGTGCCCCGGCTCCCCGCCGCCGAAGGCTCCCCCAGCCCCGCCGCCAGTTCCCCGTACAAGGCCGACTCACGAAGGAGCGAGGCGTGGGTCCCCAGGTATGGGGTCGCCCCGTCCAAGAGCAGGACGCGCTGCCCAGGTTCAGGCGCCGGAAAGTGGTGGCTCACCGTGATGACCGTGGCCGGGTGGGAGGCGAAGGCCAGCTCGGTCGCAGCCCGTGCACCTGCGTCCAGGTGGGCCGTGGGTTCGTCCAGAAGCAGCAAAGGCGTAGGTGTCAGCCAAGCCCGTGCCAAAGCGATGCGGCGGCGTTCGGACGGGGTGAGGTGGTCCGGGCGGAGGGGGCGGGCGGGGTCAGCGGCGAGGGGGGTCAGGGTGAAGGTGTGGATGGCTTCCGTGATGCGGGGGGCCGGGGCGTTCGGGGCGAGGTAGGTGAGGTTGTCGTGGAGAGTGGCCTCGAA # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 292609-292396 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGQ01000003.1 Streptomyces sp. NRRL B-3253 contig3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 292608 30 96.7 31 .............................C TCCCGCACCGGCGGGTGTGGCTGGTCGGCGA 292547 30 100.0 31 .............................. ACCTCGTCCTCGACGAGCTGTGGCGCGTCCT 292486 30 90.0 31 ...........A...........A.....G AGGCCACTCCGGTCGTCACGAACATCATCGA 292425 30 76.7 0 ..............G......CAA.C.T.A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 90.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : TGGGCAAGCCCACACCGCGCCCCCGCTACGCCACCGGCAAAGTCCGATACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCTGGAGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGGAGGTAGGTCGTGTCCTTCCAGAGCCGGCCGTGGATGTCCGTGTGGCAGGCCCGGTCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGGCGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCGAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGATGCGCGGGGGACCGGGGTCTGCTCCGCCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGGACTCAAGGCGAGGTGGGCATTGGGGCGAATGTCGCTATCGGTGAAGCGTTCAGAAACTGGGGCAGGGGTGCCGTAAGGCCGCTGGTCAGGGAGA # Right flank : CCCCGCCTCACCCCGACCCGGCGCCCAGCGCCGCCACAGGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCCGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAGAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGCGGGAGTGCGCGCGGGCTGGCGAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCACGGTGGACGCCGACGACGACCACGCGTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGGCA # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49753-49541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGQ01000033.1 Streptomyces sp. NRRL B-3253 contig32.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49752 29 100.0 32 ............................. CAGAGCGTCTTGAGGGTGCCGCGTACGGTCGT 49691 29 100.0 32 ............................. ATGCACCGCAAGATGCGGAACATGGCCACGAT 49630 29 100.0 32 ............................. GGTGTGGGCCCTGGGGAGGCTTCCTGCCTCTC 49569 29 79.3 0 .............A...T.A..CA.C... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGGTGGGGGCGGGGGTGGGGGCTTATGGGCGGGTGCGGGGGGGGTATGGGTGAGGGGCGTGTGTTGAGGGCTGGGCGTGGGCTTCAATTGAGGGCGAGTTGAGGCTGCGAGGAGGGGCGCATTATGCGAATTTGGCGCGGAATGCCGGAGTTTTCGAAGTTGGCGTGGGCCGGGGGTTAGGCGGGGTAAACCCGCAGGTCGGAGAG # Right flank : GAACTCGCGCGCGATAGCGGCGGACCGACCACCGCCCCGCTGATGGGCAGTCCACCCCCCTTGTACGCCCAGGAAGTGTTGGCGTGAGAGTTCTCCGCGCAGACGGCCGCAGAGGCAGCATCACCCCGAAGCGTTTCCGTGATCGGGCTCACACGAATGGGAACTTGCCCCCTACCCTGTCAGGGTCGACCTGTACGGGAAGGACAAGGCCATGCCATCTGACACCCCTCCGGACCCGTTCGCCGACGCCCTGGCATTCGGGCAGCGGATGGAGGTGCTGCGGACCAGGCGTGGGATGAGCCGGCCTGTTCTGGCCGGGCTGCTGGGTATGTCTCCCTCGTGGGTCAAGCAGGTGGAGCGGGGCCAGATTCAGATGCCGAAGCTGCCCGTGGTTCTGCGGATCGCCGAGCTGCTGCGCGTGCGTGACCTGGCTGACCTGACGGGCAATCAGACTTCGTCGGTCGAGCTGTTCATCGGCCCCGGGCACCCCCGGCTGCCCG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41515-41665 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGQ01000035.1 Streptomyces sp. NRRL B-3253 contig34.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41515 29 100.0 32 ............................. CGGGACGCCCCGTGGTGAAGGTGCCCCTCGCC 41576 29 100.0 32 ............................. GAGGACCCGCGACGTACGGTGCGGCTGTTCGT 41637 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 37 GTTTTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : AGACACCATCGAGAAGCAGGGGTTCACCATCGACAACCCCAACGCCACGGGCTCCTGCGCCTGCGGTGACTCCTTCAGCTGAGTCGCTTCGCCGAGAGGCGGTGCCCCACTTCGGTGGGGTGCCGCTTTTTTGCTGGCCGGGCCTCACTTGCCAGCCGGGCTCGGTGGCCTCAAGCGCCGGCCGGGCTGGTTTGGCCTCAAGCGCCGGCCGGGCTGGTTCGGCCTCAAGCGCCGGCCGGGCTGATGGGGGTCGTGTTCGGGGCGCGGGCCGTCGGCCTGTGCGGTCACAGATGGCCTCAATCGCCGGCCGGGCTTGAGTTTGGCTGGGCTTGGACGGTGGCCTCAACTGCCGGTGCGGTTGCTGGGGGTTCTGGGAGAGGATGAGCGAGGCTTCGGGTGTGACAGGGGAGGGTGTTTGCTGACATTCAACCTAATTGCGGCAATCTCGCAAGCTTGCAGAAATGGGCTGCACCGCTAGGCAAAGCCGCAGGTCATCGAGG # Right flank : CATGCGTGCGCAGCTCACCGCCGACTGCGTCGGGTGCTCTCCGCGTCTGCGGGGCCCAGGGAACCCAAGTCCCCGGCCTGCCCAGTGCCACCGGCGCGCGAGGCGCCCCGATTCCGGCGGTGGCAGCCCAGTGTCAGCCCCCTCAGAACGCCAAGATCGTGACCGTGGCCGCGTAGATCACCACCAGTAGGGCCCCGTCGAAGCCCAGGCGGAACCAGCCGCGTTCCTGGCGGATGAGGAGGCCGCCGAGGACGACGGTGGTCATGACCAGGGCGGCGCTGGTGAGGAAGAGTTCGTCGTTGCCGGCGGCGTGGTAGAGGGAGCCGCCGCGGTAGGCGAAGTCGCCGACGGCCAGGTTGAGGACGTCGAGGGAGTTGCCGCCGATGATGGCGGCGAAGGCGAGGGTGATGGCGCCGCGGCGGACGGCGGCGATCGAGGTGACCGCTTCCGGGAGGCCGTTGATGACGCCCAGGATCACCGCGCCGACGAAGCCCGCGCGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 186812-186661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGQ01000004.1 Streptomyces sp. NRRL B-3253 contig4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 186811 24 100.0 39 ........................ TCTTTGACCGGCAGGTCACATCGGACCGGCGCACAACCC 186748 24 100.0 40 ........................ TCCGTGACCGCGAGGTCGGCACCGACCAGCACCCCTCGAT 186684 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 40 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : GGTGAGCCTGGTGACGACCTTCGCCACCTTCTTCCTCGGGCAGGCCCTGCTCGGGAACCTCTCCGCCTCCATCGGCGACCCCGGCGTGCTGCGGGCCGTCATCGGCGCCGCCCTCTACATGACCCTCATGGCCGTCTTCTCCATGGGCGTCGCCGCGATGCTCCGCTCCCCCATGCTCTCCCTCGGCATCCTCGTCCCCTTCTTCTTCCTCGTCTCCTCCATCCTCGGCGCCGTCTCCGCCACCGAGAAGATCGGCCGCTTCCTCCCCGACCAGGCCGGCTCGAAGATCATGCAGGTGGTGGCGCCGCTGAACGACGACACCCCCTACGGCCCCTGGGGCGGCCTCGGCATCATGGCCCTCTGGGTGATCGCCTCCCTGGCCCTCGGGTACGCCCTACTCCGCCACCGCGACGCCTAGCCAGACGGAACCTGGCCATCGACCGGGTGGCCTCAAACGCCGGCCAGGCTTGAGTGGCCTCAATCGCCGGCCGGGCTACCAA # Right flank : ACCCCCCAGCCCACCCCGGGAGGGAACTTCCGCTTGGCCGGAACCGAACGCCGGTGACTATCCTCCTTACGTTGACGGGGACAACCCCGGCAAGGAACTCTGTCGACGGGTGCGGGGAGCACATGATCGAGGCCACCGGCCTGACGAAGCGCTACGGCGCGAAGACCGCCGTGCACGACCTCTCCTTCCAGGTGAGGCCCGGCACGGTGACGGGCTTCCTGGGCCCGAACGGCTCGGGCAAGTCCACGACGATGCGCATGATCGTCGGCCTGGACGAGCCCACCAGCGGCCATGTCACGATCGGCGGCCTCCCCTACCGCCGCGTCCCGAACGCCCCGCGCCAGGTCGGCGCCCTGCTCGACGCCAAGGCGGTGCACGGCGGCCGCTCGGCCCGCAACCACCTGCTCTGCCTCGCGCAGCTCTCCGGCATCCCGGCCCGCCGGGTGGACGAGGTGCTGGGCGTGGTGGGGCTCCAGGACGTGGCGCGCCACCGCTCGAAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //