Array 1 26555-29690 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYW01000031.1 Alicyclobacillus acidoterrestris strain NBRC 106287 sequence031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 26555 36 100.0 40 .................................... TCGTTGACCTTGAATCGGGTGAACAGCTTCCGTCAGAAGT 26631 36 100.0 37 .................................... TCAGGCCCGGCCAAAGTGCATGATTGCCTGATGTCAT 26704 36 100.0 35 .................................... TTATCAAGAAGGAGCGGTCAAAATGAAATATTGGG 26775 36 100.0 35 .................................... TGATTTGGGGGAAACAATGATACTTGCTCCCAATC 26846 36 100.0 36 .................................... CTTCTTCAACCGCAGTTTCGTCAGCTTTCCCGTTGG 26918 36 100.0 36 .................................... GGAATCACGTAGTCCGCCCAGGATGCATCCTCGTTA 26990 36 100.0 36 .................................... CTTGATTTTGCACACCACCATTGGCCCACCATGCAT 27062 36 100.0 36 .................................... TACTCTAACATGTAAGAATGCGTTGATATTTCATCA 27134 36 100.0 36 .................................... TGGGAGGTGATGGTTGAGGTTGAGGAGATACAACTG 27206 36 100.0 36 .................................... TCTTTGCGTTTTGTTCCCTGATACCATATTACACGG 27278 36 100.0 36 .................................... GCTGCAGCTATTGCGTTCGTGAAGGCGCACTTGCCG 27350 36 100.0 35 .................................... TGAACAGTGCGGGTCTGTCCTGGATCACTGCAACT 27421 36 100.0 36 .................................... GAAAAAATGCTCATTCAGAAGCGTGGGAAATTACAA 27493 36 100.0 37 .................................... GCCACGTCCATATGTCGACCGAGTCCGAAAACAAGCT 27566 36 100.0 38 .................................... GTATTGGATTTGGTACGGAGGTGCAACAAATTGGCCGA 27640 36 100.0 36 .................................... TAACTATGAGATTTGGGTCGCTGCCAACGTCACCAA 27712 36 100.0 35 .................................... CTCCTGCATGCGGTTGTAGGAAGACATGCGGACTG 27783 36 100.0 35 .................................... TCTGGATTCTCATTGGATACAACGAATAAAGTACT 27854 36 100.0 35 .................................... GAATCATCATTGACCGTCAGCGTTACTTGTGCAAA 27925 36 100.0 34 .................................... GATGATCACGTTTACACCTCCAATTGGGCATAAA 27995 36 100.0 34 .................................... TGTGATGGTTCTGTTCGTGCAGGCAAGACGGTAG 28065 36 100.0 35 .................................... GGTGTTCCACACAGCACATAGAAAATTCTCCCTAA 28136 36 100.0 35 .................................... GCTCAAAGGACATTTTGCAACCTCCTTTTGGGGGA 28207 36 100.0 36 .................................... TTCGACATAGCTCATTATTGTTTTCATCTGTCAAGA 28279 36 100.0 38 .................................... CCACCATGAAGTTGCTTGTGAAGATAAGTCTTCGATAC 28353 36 100.0 39 .................................... GATGTCCCTTGATAAAGTAACAAGTACATTTTCGCCAGC 28428 36 100.0 35 .................................... GCTATCACTGAATTAGGGTCGATTCCCGCCAATGA 28499 36 100.0 36 .................................... TCTCGCGCCGTCGCAGAGGTTGATGAGCGATGCCGA 28571 36 100.0 33 .................................... GTATTATCATAAACATATATGGATGTATCTATA 28640 36 100.0 36 .................................... CCCACGGCCTAAACGCAAAAATCCATTTTGCTTGAA 28712 36 100.0 38 .................................... TAGCTGCACTCGACGTACCTGCACCCCAACTAGACAAC 28786 36 100.0 36 .................................... CGCAATCACGATAGCGCTCATGAATAACCCAGTATC 28858 36 100.0 35 .................................... AAAACGATCTCTGTGGCAGGCGTCAACTATCAACG 28929 36 100.0 36 .................................... GAGTTGGATGATGAGGAAGCCATCGACGCGATACAA 29001 36 100.0 38 .................................... TTGGCGTGGCCGGTACATTGCTTGGATTCAGCAAGACG 29075 36 100.0 35 .................................... ATATCCCATTGTTTCGACTCGCTTCTATTATATGA 29146 36 100.0 34 .................................... TTTTGTCGCTGAACATCAATAATATCGAAGTAAA 29216 36 100.0 38 .................................... TACGCCACCCGTCACCAAGGACAAGGATAAATATGGTC 29290 36 100.0 37 .................................... TGCGACACATGGCGTTTTTGTCTTTGAAGACGTTAGA 29363 36 100.0 38 .................................... TAAAATCGAGGCAATTGAGTTTATCAAAGAATCCAGAA 29437 36 100.0 37 .................................... TTGTCGGACGTTGCTGCAACCTCACGGACAGACTGCT 29510 36 100.0 36 .................................... GAAGTTTTATAGTAAAATATATGTTGTCGATTGTTG 29582 36 100.0 37 .................................... GTAAATCCTGATAGATGTCTTTGTTTGGCGGTAGTGA 29655 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 44 36 100.0 36 GTGCCACTTCTCAGATCGCTCGCTCAGTGATCCGAC # Left flank : TCAAAGGGATTCGAATCCCGCAGGAGGCGGTTTGGGAAAGCTCTATCGGACTTTACTTATCTTATCCGTAGGTCCCCTAGCGGTTATTGAGGTTGCCTAGAGCATATGACTATCCAACTTGAGTGCCAACGTTTAGCGTAGCTCCCCCTCGACGGAATGACGTTCTTTCAGTCGTTTCAGTACTAGTTCGTGAGTGCCGTACATTTCCGCTAAATGCCTTTGATCTACATTTAGGTCGGATTTCTCGGCATAGCTCTTTCATTGATCGATTATCTCTGTCGCGAATCTCGTCATCGTATCGGTGAACCGCTTTTCTTGTTCTTCAAGCGCTTTGGTAAATCGTTCTTCGATGACTTTGGTGAACCTTGTTTCCTGCGCCTTAAATTTTTCATCCAGGTAGTTTTTCAATTCCTGATCCATGTCAGCACCTCGCAAACGTATTTTACTATGCTCAGTGATCCGACATTTCTGGCCGCTCTGAGCGATGATCATGATGTACG # Right flank : CGGCGGGCGCTCGCAGCCCTTGAACCACGCGGAGATCCAAGCCCATAAACGAGCACTTGATGTTTCCCGTCGATTTCATCTCGTTTCATTCTCGTTCTCTCCCGTCGTTTTCGCCGCGAATCCCTTGTCCCACCTATATTTCGAGCGCCTCCCAGGGTTTTCGCCCTGAACAGGCGCTCGAAAGGTCAGAACACTGAGCGAGCGTTCTTTTTGAGAAGCTCAACAGGCTTTGCCACCTGGAAAGTGGCCATTGGCACACCCGTTGAATAATCTGTCCTTTAGACAAGTTATATTTTACACGTTTTTGAAGTTCACATCAAATCCTCAAAACACCAATCCCTTCAAATCCAATGGTACGAAATCCCGTCCAATGCACGACATATTCCGCTCGGCAGCGTTCGCCTGCACAGTTCCAATCCTTGCAAAAATGACTTGATCCATCGACTGATGAATCACGTCCAAGAGCAATTGCTTCAACTCAGCCTCATCCTTTTCAGTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCACTTCTCAGATCGCTCGCTCAGTGATCCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 2840-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYW01000080.1 Alicyclobacillus acidoterrestris strain NBRC 106287 sequence080, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2839 33 100.0 34 ................................. AGCGTAGAAAGTGGGGGACCTTGTCCGAAGATGA 2772 33 100.0 35 ................................. AAGCTCACGTACCAATTCCTCCGGCATTCCTTCGT 2704 33 100.0 34 ................................. GATATCGACACTGCAGTAGGCGTGCAACTAGATA 2637 33 100.0 35 ................................. AAGAACTTGGACAGCCTCCTGCATCGTCGCGCCAC 2569 33 100.0 34 ................................. CAGTCTCCGTGCAAGGCATCTCCGACGAGATTGA 2502 33 100.0 34 ................................. ACTCAACTCTGCGTACAACCGCTTCATCTCTTCA 2435 33 100.0 34 ................................. AACTCGGCCAGAGAGTCAACGTACTTCTTCAAAG 2368 33 100.0 34 ................................. CCTAATTCGGCCCTGCAAATCATCGATAACCAGG 2301 33 100.0 33 ................................. CTCCTGACCAGATTAACATCAGTACAGCCACTA 2235 33 100.0 34 ................................. TGATTGGTCCGCGATGGTATCGGCCAGTACGATG 2168 33 100.0 34 ................................. ATGCATCTCTGCTACTGTCATTTAGATTACCTCC 2101 33 100.0 34 ................................. TCCGGGTTGTAGAACCAGTCGCGCGCTGCGTTAA 2034 33 100.0 34 ................................. AGAATCTCCTGTGGGGTTTTCTTCGTCCAGTTCG 1967 33 100.0 35 ................................. AAGAACTTGGACAGCCTCCTGCATCGTCGCGCCAC 1899 33 100.0 35 ................................. CAGGATGGCTACACGGCGGTCTACGGTCATCTACA 1831 33 100.0 35 ................................. AATAAGTCCCCTGAAGAGATGAAACAGGAGGCCAT 1763 33 100.0 35 ................................. TAATATCGCACCCGCAACACATATGTACACTGCAA 1695 33 100.0 34 ................................. TTCCAGCCAGTTAGAGATGATGTTGGCACCATTA 1628 33 100.0 34 ................................. ACTTATTGCTGGTCGCACTGGTCATATCCTACGA 1561 33 100.0 33 ................................. GTCAGTGCTGAGTGTGGTAGCTAGACTTGCTCC 1495 33 100.0 35 ................................. ACCGCTGTTTACGTGACCAAGTTTGAAGAGATGGA 1427 33 100.0 35 ................................. GTCAAACAGCGCCTCGGGCGCTATTGGGAGCGCGC 1359 33 100.0 34 ................................. CGGAGATCCTCAAAGCATTCGAAGTTGTGATGGA 1292 33 100.0 35 ................................. GAATTCGAGGAGTACGAACTCAAAGACGGCGAGCC 1224 33 100.0 35 ................................. ATGACATCCTACAAAGTGGCAAACAGAGCGTTTGA 1156 33 100.0 34 ................................. TGCTTGTCAATCACATTGATCACCTCTCTTGACA 1089 33 100.0 34 ................................. ACCATCTTTATACGTGAAGGTCTTAGGCAGTTGA 1022 33 100.0 34 ................................. TCAATTGAGTGTGTAAACGCTCTTAATAAACTTA 955 33 100.0 35 ................................. ACAAATTTATACTTGACATTTTATAAAAGTTGTGA 887 33 100.0 34 ................................. AATCCATCGCACATATCCATACATCAATAAATAA 820 33 100.0 33 ................................. ATATATCCATGAAAGCTCTTGTATTTTTTCTTG 754 33 100.0 34 ................................. ACCTTTAAACGATATGGAACCCATGATGATCTTG 687 33 100.0 34 ................................. AGCATTAACACGAGCAAGCACTAATTCGGCCTAT 620 33 100.0 34 ................................. ACAGTAGCCCAAACCGCTCCAGCGTTTGCTGTAA 553 33 100.0 34 ................................. GAACTTTTGGCTGGGAGCAGAAATCGTCGGTTAT 486 33 100.0 34 ................................. GCATGGTTCGGTTTTTGACGGACAAGCAGAAGCC 419 33 100.0 33 ................................. ATCGGGGCCGTAATTCATACAGAGATAGAACAC 353 33 100.0 34 ................................. ATTCTCTGTGCGGAAGCAAAATACCCCCTCCAGC 286 33 100.0 34 ................................. GACGTCGGTATACGCTCACTGCACAGGATTTTGA 219 33 100.0 34 ................................. ATCGACCGCAACGTCCGTCTGGCAACCCTACAAG 152 33 100.0 34 ................................. TTCAAAATCAAGCTCATCCATTGGCTCAGTCGGA 85 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 42 33 100.0 34 GTCGCATCCCGCGAGGGATGCGTGGATTGAAAT # Left flank : TTGGATGAGTATCCACCTTTTATGTGGAAGTAGGTGAGGGAGTGCTGGTTTTGATTACTTATGATGTAAGCACAGTCAGTAGAGAAGGACAAAAACGGCTGAGGAGGGTATCGAAGGAATGTCAGAATTACGGTCAGCGTGTTCAAAATTCAGTGTTCGAATGTGTTGTTGATGCCACGCAATACGCAGCTTTAAAGTTAAAGTTGATTGACCTTATTGATGAGGAGCAGGATAGCCTTCGATTTTATCAATTGGGCAATAACTATAAAAGCAAGGTAGAGCATGTTGGAATCAAAGAGTCGGTCGATCTGGATGGTCCTTTAATTTGGTAGTGCGAATGTGGAGCGCACATGATTTAGAGAGGGCATTCGCACCATGAAAATGGATTATATTGGTTTGTCATTAGGGTTTATGTGAATTTTACTTTAGGAGTCTATTGGATTTGTTTGATTTTTTATGAACAAAATGTTGGTTTAGTTTCGTTTTTATTGAAAAATGCG # Right flank : TCTCGACAGTGGGTATTGGCGGTTTTACTTCACCGGTCGCATCCCGCGAGGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCGAGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.80,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3036-1115 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYW01000097.1 Alicyclobacillus acidoterrestris strain NBRC 106287 sequence097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 3035 33 100.0 34 ................................. ACGAGTTATGGCTTTGACGCGGTAGCTGGTATCC 2968 33 100.0 34 ................................. AAGACCCTGTACCTCCTATTATCAATTCCATCGC 2901 33 100.0 34 ................................. TGACATCATGCTTACGCAGGGCTTGGCGGCTCGG 2834 33 100.0 36 ................................. TCCGTCACGCCATACCTCACCAACGCCCCATCCTTC 2765 33 100.0 34 ................................. ATACCAGCAGGAGAGCGCCCGAACAGCTTTGTAA 2698 33 100.0 35 ................................. GTGAAGAGCGAATGTTTCTTGAATAAACCCGAATG 2630 33 100.0 34 ................................. GGAGCGCAGACCGGACGCCCCAACATCTTGCACC 2563 33 100.0 34 ................................. ATCGTAGACTCCAATCCATCCACTAGATCTAGAC 2496 33 100.0 34 ................................. ATCAATATCTTCGATGTCGAGTATTGTATCCGAA 2429 33 100.0 34 ................................. CGACTGCTCAAGGAATTTTTTCAGATCTTTACGA 2362 33 100.0 35 ................................. CCGCAGAGTTGAGCGGATATGGGACATGGTCACCA 2294 33 100.0 34 ................................. ACCCATAAACTCTCCGACAACTATGGCGCGTTCG 2227 33 100.0 35 ................................. CCGCAGAGTTGAGCGGATATGGGACATGGTCACCA 2159 33 100.0 35 ................................. CAGCATGTCCCCCTCGGCCATATTTGCGACAGATG 2091 33 100.0 34 ................................. ACCCATCACACATCAACTCCTTTTGCACAAAGAT 2024 33 100.0 36 ................................. CAAAAATTGTGGAATAAGAAATATAATGAGGAATCA 1955 33 100.0 35 ................................. ATCGGCAGATACTTCAACGATATCTAAACCTGCGC 1887 33 100.0 34 ................................. ACGACCATCGTAATTCCCCCCCTGTGTATCGAGA 1820 33 100.0 34 ................................. GCCACGATCAGGATCATCGTGTTGACCAAGTTTA 1753 33 100.0 35 ................................. GCCTATTCCATACTCATCGCAACATATATCATAAA 1685 33 100.0 34 ................................. AGCAAGGTCAAGCAACGCCGTGCGTACGTCTGGA 1618 33 100.0 34 ................................. AATGTTGGTACAGAAGGGAAGCGGGGCACATGAC 1551 33 100.0 35 ................................. GTCGATTGCGTTGGGGATTCGATTAAGCCGCGCGT 1483 33 100.0 34 ................................. ATCAATCTAAAGTTAATGCAATTCTATACTTTGA 1416 33 100.0 34 ................................. TTGACGACACTATTCTGCGACCTCCTCGACTGTC 1349 33 100.0 34 ................................. TCCTCGCACACACTCGCCGGACGGCTTCGTCCAC 1282 33 100.0 34 ................................. TAGCATGATCGTCCCACTCGCGGATGAATGGATG 1215 33 100.0 35 ................................. AACAAAGGGACGTCAGCGTATTACGAAGCGATCCT 1147 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 29 33 100.0 34 GTCGCATCCCGCGAGGGATGCGTGGATTGAAAT # Left flank : GCGAGGGATGCGTGGATTGAAATCCTGAAGCTGCTTTCGACGTAATGTCCTTCACC # Right flank : TTCGATCCACGACCACCTTTGACCACTCGGTAACGACCTTTGAACCGCCAAAACTCAGTGTATCCTTTACCAACGACCGACTTAAGACTAACTGTCGTCGTCGAGGTCATCGACAAACCTCACAGATATGGCTTTTTCGTCATTGTCACCGAGTAGATCATGCTTGAGTTTGAGGGCTTGGCGTATTTCCGATGCAGTGCCTGTCAGCAGGTCAACCATCGGCTTGGCCTCCATGAAGACCCCGCCGCCTTCGACGTTTCTCATCAACCAGGACTTAGCTCCCTGATGAAGTTCGAAGTTACTCTGGATGGTTGCGTCGAGCATCTGCAAGTCAGTCAGACGCTTATCCACCGCATTCTGCATGATGGTTTGAGACTCTTCATAGTAACGTTTGGCAGCTTCCTCTTTCGGCGCGAAGTGCGTATCAAAGTGACGCCGCACGCTCGCCTTAGAGATGGACACGTCATGCTTGGCAAGGAAATCCACGACCTGCTGTAGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCGAGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.80,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //