Array 1 137417-136654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRZ010000004.1 Pectobacterium carotovorum strain CFBP1402 Pectobacterium_carotovorum_CFBP1402_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 137416 28 72.4 34 ..T..G.T-.T...TT.A........... TGGCTGCGCAATTCTGTGATGTGTGGCAATGCGA 137354 29 93.1 32 A.C.......................... TCCATGCCTTTCCACTGGAAGCGCTCAAGGAT 137293 29 100.0 32 ............................. GTTTGAAAACTCGGCATCAATCAGCGAGTCCA 137232 29 100.0 32 ............................. GCTCAACGCATCGAGTCTCAATTGCTAGGGAA 137171 29 100.0 32 ............................. CTATTCCGGTGAGGCGGCTGATACATACAAAC 137110 29 96.6 32 .............T............... CGCAGCATATCTCAGAACAGCCTTTCTCACAT 137049 29 96.6 33 .............T............... AGAAATCTCAAAATCAGGTGGTTATTCTACCGA 136987 29 93.1 32 .............T..............A TGGAATGAAACACAAATACCAGTCAGCCAAAT 136926 29 93.1 32 ............TT............... CTCAAAGAAACGACAGCCGTTTTTCTCGTAAA 136865 29 100.0 32 ............................. TTCGTTTTTGATACCAGTGAGCTTGAAGATAT 136804 29 100.0 32 ............................. CGCGATGTGATTCAACAGTTCGGCATCAGCGA 136743 29 93.1 32 .A........T.................. TTCAGAGATTGCCAATCAGATGCGCCGCCGAG 136682 29 89.7 0 .C..........T..............T. | ========== ====== ====== ====== ============================= ================================== ================== 13 29 94.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTATCTCGCACACTTGTGGTTCGCCGTTGATGAGCTCAAAGATAATGCGGTAATCTCCAACTCGTAGACGATACCGTTTGCCAGACGATTCGAGTTTTTTCAGATCCAGATTCACATCTGGAAATGTACTAAGCTCGCCCACTTTGTCTTTGATTCGTCTTCGATATCTGGTGTCAATTGTGCCGAGTTGTTTTAATGCCCGTTTTGACCAACTAACCTTAGTCATGAATCCCTCAAACGAAAGTCTTCCCTGATATAAGTTAATTATAAGACAATTTAACGATTTTTCTTATGTTTTGTTTATG # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCACGGGGTCAAATCCCGCTTTTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCAGTTTTGCACCCACTGTAACGGTGAGGCGCTATGCCAATGATTTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGTAGGTCAGACGACACGATATGATTTCACCCGCATTAGCCCTGCTGAGCTGTATGACACGGTTGAAGGCCTTGTCAGCAGTGGACGGTTGGGACGTGAAGAAGGGTCTGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCAAT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 139284-138218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRZ010000004.1 Pectobacterium carotovorum strain CFBP1402 Pectobacterium_carotovorum_CFBP1402_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 139283 29 100.0 32 ............................. ATTTGGAGAAACTGAGCAAGGCGGAGAATAAC 139222 29 100.0 32 ............................. TCACAGACGGTACGAGCGGAACGACAGTGGTA 139161 29 100.0 32 ............................. ACGCGACGCTTAGCCATAACGCGATCCTGAAT 139100 29 100.0 32 ............................. TGTCATCGATAACACGATCTTTGGGTAGATCA 139039 29 100.0 32 ............................. CGTTAAAAGTGAGAGTTTTCTCGGTAATAAAT 138978 29 100.0 32 ............................. GTGATGCCCAGATGTCTCACTTGCGCGGCATT 138917 29 100.0 32 ............................. CATGCTGATAATCAGAGCGGCCTGGGCTTCAA 138856 29 100.0 32 ............................. TAAAATCGTTTCAAAATCCAGCGTTTCGATAA 138795 29 100.0 32 ............................. GTAATCGCAACACATCGAACATTTACACGTTA 138734 29 100.0 32 ............................. TTGTTTTTGCGCGATGGCTATGTCGTCCATGC 138673 29 100.0 32 ............................. CCCGCCGATATGGAAATTCGCATCGTGCCGGA 138612 29 100.0 32 ............................. AAAAAATTCGCTTGATACGCGTTGAAATCGAA 138551 29 100.0 32 ............................. CAGGCTCGCGGCCAGCTCCGGCACGTTGGTGC 138490 29 93.1 32 ..........T..G............... TAATCAAAGAGACGCCGGGCAGTCGGAGAAAG 138429 29 93.1 32 A............G............... CGGGATGCATGGGGCGCTCAGATTGGTGCGCT 138368 29 86.2 32 .A..........TT.............A. GCCATGTTCGGACACGTCGAAACCGACACTTA 138307 29 100.0 32 ............................. AGATCATTGCAAACAAAGAGGAACCGTTCAAA 138246 29 93.1 0 ................T...........C | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGATGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGTGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGTCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTCTTTATTCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : TAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCGTCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //