Array 1 147804-142685 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPN01000002.1 Streptococcus cristatus strain BCA4 D8797_contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 147803 36 100.0 30 .................................... TGATAATAGTGTTTAAAAGAATATCCTAGA 147737 36 100.0 30 .................................... ATTTGTCGTGACACTCCTCTCGTTTCCGAC 147671 36 100.0 30 .................................... GTATTTATCGTTATATCAAGAGGGGTGCTA 147605 36 100.0 30 .................................... TCAAGGGGATTTGAACGTGATAAGTTCACT 147539 36 100.0 30 .................................... TTATGTCGCGAAAGTTATTGCTAACAAGCT 147473 36 100.0 30 .................................... AACTGTCATAGGTTCACCCCCTTTCAAGTA 147407 36 100.0 30 .................................... ATCTCACATAACTACTTTGTTAAGACCCAA 147341 36 100.0 30 .................................... ATTCGTCCAATGCAGGAACAATCTTTCTGA 147275 36 100.0 29 .................................... GCCGTGTCTGTGTTATTTTCTGGACTTTC 147210 36 100.0 30 .................................... TGAAAACTTTTCCAATGGTCGTGCTTCCAA 147144 36 100.0 30 .................................... CAACTTCTTCTCCTACCCGCAACAATAGCG 147078 36 100.0 30 .................................... ATCGGGAGAATGCGAGAAAGTATCGTGAGC 147012 36 100.0 30 .................................... CAGTCCTGGCTATCACATCAGCTACTCCCT 146946 36 100.0 30 .................................... CCGACTTGAACAACTTCTTCAAAACCTTGT 146880 36 100.0 30 .................................... AAGCCAAGGCGTAGCAATTCTCCTGATTGT 146814 36 100.0 30 .................................... TCATGATATAGGTTTTTCTCATCATATTAA 146748 36 100.0 30 .................................... GGTATGGAATCATCACTTGTAATGACCAGT 146682 36 100.0 30 .................................... ATCTTCGTGATGTTGTATCAGGGCTAGTGT 146616 36 100.0 30 .................................... CTATTCATCCGCACAACTAACTGCCGATTT 146550 36 100.0 30 .................................... CATCTTCCCAGCGGAAAAAGTTCGGCAGAT 146484 36 100.0 30 .................................... TTTGCAACTCTATGCTCTTAACTGAGGGCT 146418 36 100.0 30 .................................... GGGAGGTGTTGCTGGCTATTTCCAGTGGTC 146352 36 100.0 30 .................................... TTGTTTATAATTTGGCTATAGTGTTGTTCT 146286 36 100.0 30 .................................... TTGTTTATAATTTGGCTATAGTGTTGTTCT 146220 36 100.0 30 .................................... TCAATAGAGGGGACGCTAAGAACAGCAGGA 146154 36 100.0 30 .................................... AAACACTGATGATTACATCCTAGTTGGTCT 146088 36 100.0 30 .................................... TATTGTTAAGATCCAAGATAATAATTTTGT 146022 36 100.0 30 .................................... CAAAAAATGGGATACCTTCAACGAAGAAGC 145956 36 100.0 31 .................................... CTTGCCGCCAAGCTCAACATAGCTCTCATAG 145889 36 100.0 30 .................................... ACAAATATGACCATCATTTTTTGACAAGTG 145823 36 100.0 31 .................................... CTAACACTTGCGGACGAGCTTTCATTTCACA 145756 36 100.0 30 .................................... TAATGGTGTTTATGATGTGGTCATAAGGAT 145690 36 100.0 29 .................................... AGCAGTTTGACATTGAAAACGCTCTGCCG 145625 36 100.0 30 .................................... CCAAGCAACAATAGTCAGCTTCAAATGCCA 145559 36 100.0 29 .................................... CCCGATTTATAAAACAATTCAGAACGCAG 145494 36 100.0 30 .................................... ATGATGGTATCTATGCCCGTGATACTACCA 145428 36 100.0 30 .................................... GTAACATGATTTCTAGGTTGATTTTGTCAA 145362 36 100.0 30 .................................... CCTACCGCATTGATGATAGTCGCTACTCCT 145296 36 100.0 30 .................................... TCCAACGCTGGGAATACGGCGCAGAGCCGC 145230 36 100.0 30 .................................... TTCCCATCAACATCCACACCATCCGCATTC 145164 36 100.0 31 .................................... TAAGTCAACGTTAGAAACTTTAGTGCCTGTT 145097 36 100.0 30 .................................... AAGGAGAAGATAACATTGTAGCTGGGTACA 145031 36 100.0 30 .................................... CTATCATTTTCCGAATGATATTAGATGGAA 144965 36 97.2 30 ..............C..................... TTATAGATGAATTTATCAAACTAAACGACC 144899 36 97.2 30 ..............C..................... GAGAATTTAGCCCAAGCATTGAATTAAGTT 144833 36 97.2 30 ..............C..................... TCAACTCAAGTGCTAACGAACGCCAGCGCT 144767 36 97.2 30 ..............C..................... GTCTCTTCTAGACTATCCTGCGCCCACACA 144701 36 97.2 30 ..............C..................... AGGGTTTAACACCCAGCACAGCGAAAGTCT 144635 36 97.2 30 ..............C..................... CTTGTTAGACCATATACAAACTGGTCAACT 144569 36 97.2 30 ..............C..................... TCGATCGCTAAAATACAAAAGATAAAAAGT 144503 36 97.2 30 ..............C..................... GCATTTCTATAGCGTATTTCTTTTTTTGGT 144437 36 97.2 30 ..............C..................... ATAGAAGGAAAAAAATCAAGCAGCGACTCT 144371 36 97.2 30 ..............C..................... TCGATCGCTAAAATACAAAAGATAAAAAGT 144305 36 97.2 30 ..............C..................... GCATTTCTATAGCGTATTTCTTTTTTTGGT 144239 36 97.2 30 ..............C..................... AGTCAGATTATAGAGAAGAAATAGACGTCA 144173 36 97.2 30 ..............C..................... CCCATCTTTATCTTTCTGGTTGGCTCTATC 144107 36 97.2 30 ..............C..................... CTCAAGACGATTTCTGCGGCCTGATGGGAT 144041 36 97.2 30 ..............C..................... CGCATCGATGACGTGGTTATTCGCATCTAT 143975 36 97.2 30 ..............C..................... TATAGCCCACGGGATAATCTCAGGGGGCTT 143909 36 97.2 30 ..............C..................... ATCATCAGCTTGAAATCAGGCATTTTACGA 143843 36 97.2 30 ..............C..................... ATGTTTCGAGCGCCAATGTTTCCGACACGT 143777 36 97.2 30 ..............C..................... CTGCTTTCATGGCAGAAAAGGAACCACTAA 143711 36 97.2 31 ..............C..................... CGTAGGAGGTGAGACGTATGACTAACTCGCT 143644 36 97.2 30 ..............C..................... TAGTTCTCCAGCCACATCTCAGCTATTGCC 143578 36 97.2 30 ..............C..................... TACTGGCGCGTTTGACCCTGTATCAGAGCA 143512 36 97.2 30 ..............C..................... CATCTGTAAACCTCCTTGCGTTGTCTAGTT 143446 36 97.2 30 ..............C..................... CTCGTAGTGACTTGCGTAGCTTCCAAAAAG 143380 36 97.2 30 ..............C..................... GCAACCACTTGCAAGATGGTCAATCTTTTA 143314 36 97.2 30 ..............C..................... TTAAGAAGTCAGCAGAAGGCGTGTCTTTCA 143248 36 100.0 30 .................................... CAATAACTTGTCAGATAGTGGAGCTTGGTC 143182 36 100.0 30 .................................... CAGACCATCCACGATAAGACGATTGTCAAT 143116 36 97.2 30 .............A...................... CGGGCAGAGCTAGGTCTCGAGGCTGTGTCA 143050 36 100.0 30 .................................... CCCTCTGATTTTAGATAGAAAAGCTGAGGC 142984 36 100.0 30 .................................... GAACAAGCTCTCCTTCCCACGTTCCCACGA 142918 36 100.0 30 .................................... AATCAAAATATCTACCTTCTTCAGAATGAA 142852 36 97.2 30 ..............C..................... ATGTGATTTCAGCTGAGGCAGAGAGTGTCT 142786 36 97.2 30 ..............C..................... GCAGTGTAATGCGGTATAATAAATAATGTA 142720 36 97.2 0 ...........A........................ | ========== ====== ====== ====== ==================================== =============================== ================== 78 36 98.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGACAAACCCGAAGTCAAGTCCATGATTGAAAAGTTGGTTGCTACGATTACAGAATTATTGGCATTTGAGTGCTTGGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCTTTAGGAGTCAAAGTTGAAACTCTGAGTGATACACCTTTTGAAAAGATGCTAGAAATTATCCAGGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTATTTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGAGTCTTATTTGTCGAACCTCGAAAAGTCTTTGATTTCCCGCAGTATGTACTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : TCAGCGCCCCAGATTAAAATAAATCCGATTCTTGAAAGGAGGGTCGGATTTTAGTTTTGTTTGATTTCGATTTTCTTACTATAACTTTTTTGCAATATCTGCTTGTATTTTCCTGAGATTCTGCTATAATGGTATAATATTTATTTAGGAGGAAGAGAATGAGCTATATTTTGGAAATTTTACCTAGTCTTCTAAGTGGAGCAGCAACCACCTTGCAGGTGTTTGCTTTGGTCTTGGTTTTTTCGATTCCTTTGGGAATTATGCTGGCTTTTTCAATGCAAATTCGCTTGAAGCCTCTGCAATGGCTGCTTCATATTTACATTTGGATTATGCGTGGGACACCGCTTTTGCTACAGTTAATCTTTATTTACTATGTGTTGCCAAGTATAGGGATTCGGCTGGATCGGATTCCCGCAGCGATTATTGCTTTTACACTAAACTATGCGGCTTATTTTGCGGAGATCTTCCGCGGAGGAATTTCTTCTATTCCGACTGGACAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 9742-10289 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPN01000005.1 Streptococcus cristatus strain BCA4 D8797_contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 9742 29 100.0 47 ............................. TTCGCACAGAAATTGCACTTTTGTGCTTCCTCTCCACGCGAATTTTT 9818 29 100.0 48 ............................. TTTAAATCAAAGAAGAAATTCTTCTTTCGAAGAAGACCGACTGGTTGA 9895 29 100.0 41 ............................. AAAATAGTTATTCTATTCCTTTCATTTAATATTTCAATTAA 9965 29 100.0 45 ............................. ATATTAAATTTCTGGGTCTGAGCTTGAGGCTGAGTAACGCTCTCA 10039 29 100.0 44 ............................. TATACGGGATTCGAACCCGTGACGTCCCGTCGTGTCTGTGTAGT 10112 29 100.0 44 ............................. CGAACAGATAATGAATAATCGAAATTATTCCCACTATCGCAATA 10185 29 100.0 47 ............................. AACACCCCTTTTTCTGATATATAGTTTACATACCCTGATTGCACTTC 10261 29 82.8 0 .C.......................GTTG | ========== ====== ====== ====== ============================= ================================================ ================== 8 29 97.8 45 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : CATGCTTCAAATAATCGTCCTTATAGTTTGCATCTGGATTTTGCGGATTATATGAAGCCAGTTATCGTGGATCGAGTGATTTTGAGTTTGATCAATAAACATCAAATCAATGCCACAGATCATTTTGAAGAAAGGGAAGATGGCTCGATTTATCTGAATCGGGAAGGGAAGTATATCGTCTTGCGAAGTTTTGAGGAAAAGCTACAGACGAGGCTAGTCATGGGAGGCTCGACCTATACCTATGCCCAGCTCATCCAGCACGACATTCGCCAGTTTAAGAGAATCTTGCAGCAGGATGGGAACTTAAAACGCTTTAAACCCTACAAATACTATTAAAAAGTCGGTCGATCTTTTCGATTTTTTGCCTCCTTTTTAAAAGCTGTCAACCAAGCGGTTTATGAGCGAAGGGTACAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTGTTTTTTGATACAATCAAGCTAGAAACAGCGAAAATGCTGTT # Right flank : GCTTCAACTGAAAAAACTTGCGGGTGCAAGTTTTTTATGGTATATTGGAAGTGCTTTCATGATGAATGTCTTAATCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATATAGTCACCATATCTTTGTTTTGCCCTTTGCGGCCAAGGGGCTGGAGTCTTTTCCGAAGTCTTCCAATTGGAAGAAACTCAGCCAAGATGCCAATGAACTCCCCTATCTGAACGTGGAAGCTGGTGGAAAAATCGAGCGATTAAAGTACGCTTATCGCCGATATTTTAATAAAGAAGCAGAGGAGCTGATTTTCCGTAATCCTGAGCTGGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGACGTGTATCGGATCTCTTATTATAATCAAATCAACAAACTTGAGTGTTATGACCTGACGCTTGACTATATCATGCTTCGTTATTTTCCAAATTTAGAAGCAGGTTTCCTAATTTTTTCAATGGAAAATCGTTGCTATGAGAAATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 12359-12779 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPN01000005.1 Streptococcus cristatus strain BCA4 D8797_contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================== ================== 12359 29 100.0 50 ............................. AAAGTTTTTCTTCTGAATTGAGAATAATATAGTTAGATAATTTATTTATA 12438 29 100.0 48 ............................. GTTTGGATCTTCACTATAAAGATTCAAGCCGCGTTTAAGTGTAAACAC 12515 29 100.0 58 ............................. CTACCGAAAGTAGCAGGTGTCACAACAGGCGCAACTACACCAAGTGTGACAGCAGTAA 12602 29 96.6 47 .......................C..... AAGTAGATATCAGTACCAGTCTTAACGTACTTGTTGTAGAACTCTTC 12678 29 100.0 44 ............................. TTTGGAGTTCCTATGTATATGATTATTCAGGAAAAATCATACAC 12751 29 86.2 0 .........................GTTG | ========== ====== ====== ====== ============================= ========================================================== ================== 6 29 97.1 50 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : ATTATCTTGACATACGATGTGCATCGCAAACGCGTGGCCAAGGTTTTGAAAACTTGCCGAAAATACTTGGTTCATGTGCAAAAGTCGGTCTTTGAGGGGCATATTACTCCAGCAAAGCTGAGCGCTTTACAAAAAGAATTAGCCAACATTATAGAACCTCATACAGATTCTGTACAGATTTATCAGTTGGAATCTCCAAAATACACTAAGAAGCTCCAAATCGGAATAGTCGAATCGAATGAGTTTATCCTTTAGGTGGTTGCTGTAGTGCCCTAGCTAATAATCTAATCGCATGAAGTGTCTTCTTCATGCGATTTTTCTGATTTTGTCTTTCAAAAAGTCGGTCGATCTTTTCGATTTTTTGTCTCTTTTTCAAAAGCTGTCAACCAAGCGGTTTGTAAGCGTTAGGACAAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : GTGTGTCTTTGTCTGTCTCCGAGGGCACCAAAAAAGCGAGCAAATTTTTGTCTGCTGGGAAGCGTGAGAATTTGTTCGCCTTTTGTTTATAGGAATATTTGAAATTTCCATCATGATTTGCTATACTAGTAGCAGTTAGAGATTGTAGCGGAGCTGTTGGCTGCTATATGGATAATCAAGAAAAGTACTCTTCAGTACTTTTTTATTATTATAGAAAATGGAGGGATTATGCTTTACATTTGGTCTTATTTGAAACGCTACCCCAAGTGGCTGGTGCTGGATTTTGTGTCGGCTATATTTTTTGTAGTGGTCAATCTAGGGTTGCCAACGGTTTTGGCGCGCATGATTGACGAAGGGATTAACCAAGGCGATCAGGAACGCCTGTATTTCTGGGGCTTTATCATGCTGCTGGTTATTATCCTTGGGATTTTGGGGCGGATCGTCCTTTCCTATGCCGCTGGAATATTAACGACCAGCATGGTGCGGGATATGCGGAATGA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //