Array 1 298307-297318 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPJV01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SL7207 NODE_2_length_683599_cov_23.8398_ID_2064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 298306 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 298245 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 298183 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 298122 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 298061 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 298000 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 297939 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 297878 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 297816 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 297713 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 297652 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 297591 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 297530 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 297469 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 297408 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 297347 29 96.6 0 A............................ | A [297320] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.4 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 315871-314439 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPJV01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SL7207 NODE_2_length_683599_cov_23.8398_ID_2064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 315870 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 315809 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 315748 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 315687 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 315626 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 315565 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 315504 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 315443 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 315382 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 315321 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 315260 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 315199 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 315138 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 315077 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 315016 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 314955 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 314894 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 314833 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 314772 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 314711 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 314649 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 314588 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 314527 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 314466 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //