Array 1 44411-42734 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNZ01000028.1 Cronobacter dublinensis strain cro981W contig28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44410 29 100.0 32 ............................. GTTAATCAGGGTTTTGTACTTATCCATGCCCG 44349 29 100.0 32 ............................. ACTGGGAGCGCGCGGCACAGGCGCAGCAGGGG 44288 29 100.0 32 ............................. CACGTCTATTTTTGAACGCAAAAAGCCTCTTG 44227 29 100.0 32 ............................. CACGAACGGCTTGCGACGGTCGCTCGCGAAGC 44166 29 100.0 32 ............................. TTCATTGCCACCGGCAGCTACATTGAAAACAA 44105 29 100.0 32 ............................. CGCGACTACTCGCAGTTTATCGCGTACCCCGA 44044 29 100.0 32 ............................. TGATCGCGGCCCTTCGTGAGCGTGGAGCAAAA 43983 29 100.0 32 ............................. TCACCCCGCATTATTGCCAAACCTGGTTATTG 43922 29 100.0 32 ............................. ATTTCCGCGGGCGCAGGGTGACAGTGATTAAT 43861 29 100.0 32 ............................. CCGCAGCCGCGCTGAAACAGGCGCAGAACCTG 43800 29 100.0 33 ............................. TGCGTACAGAAGTGCGTAACAGTGATTTAAAGC 43738 29 100.0 32 ............................. CGTGGAGACTGAGAAATGACAATCAGTTTTGA 43677 29 100.0 32 ............................. AAAAATGTTGTTAAAACTGATTTTGTGCGCGC 43616 29 100.0 32 ............................. GACGTGATCGGTGAGCGGATGAAAATCGCATA 43555 29 100.0 31 ............................. GCCGGGAGCATTGGCGCGGCCGCATGAGAGA 43495 29 100.0 32 ............................. TGCGGGCTGGGCTGTTGTTCAGCGAGATTTGC 43434 29 100.0 32 ............................. CGTTTCGCTCGCACCTGGTTACAGAATTGTAC 43373 29 100.0 33 ............................. CACACCAGCGCATCAAACTGGCCCTGTGTGAGC 43311 29 100.0 32 ............................. TGGTCGACGCCTGCGCGAACGGCGGCACGCTC 43250 29 100.0 32 ............................. TTCATGGAGAGCGTAGAGCCGGGAAGAATTAT 43189 29 100.0 32 ............................. TCCGGCAATATCGAGCTCTATCGAATAAATCT 43128 29 100.0 32 ............................. CTAATTACCCTCGCTGACGCGCTGGCGGGCTA 43067 29 100.0 32 ............................. GACGCGGGTATTTACATAGAGCAAAACAAGAC 43006 29 100.0 32 ............................. CCCCGTTGCACTTGAGCCGGGGTTTTTCTCAT 42945 29 100.0 32 ............................. GCTGCTCTGCCTGTATTCGTGGTAACTGCACC 42884 29 93.1 32 .......T....T................ TGGCCGCGCTTGGCTCGACTATCGGGGCGGCA 42823 29 96.6 32 .....T....................... TTCGACGGGCTATCTGCCGAAGAGGCGGAGCA 42762 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GGGATAAACCGCGAGCGCCCTGAAGCCACCAAAGCAAAAGCA # Right flank : GCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGAGAGTTATCGAAAAGCACAACCAGCTTTTAAACTATACAGGCATTACTGAGATGAATAAAAAAAACTTTTTACTGGCTATTCCAGCGTTATATTGTTTTTGCGTGTTTGCCGGGGATGACACTCCCGGGCAACAGCCGCAACAGGCCGCGCTCAAATTCAACCAGTGGTATATAAAACACTTCAACGATTCGGATGATAATCTGCTTAACAGTAAAGAAATCGAAATCTACGTGGCGAAAGAGACGCTGGAAACGTTACGTCACGCGAGAAATAACGATGATGAATTTTATGATGCCGACTTTTTTATAAAGGCGCAGGACATTATGCCTGACTGGCCAACACATACGGTTGTAACCGGCGCAGAATACGATCCCGTTTGTACTCAGGTGTACGTCTCATTCGGCCAGCATCAGACGCATGACGTGGTTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1509-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNZ01000006.1 Cronobacter dublinensis strain cro981W contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1508 29 100.0 32 ............................. CGCTGGTATCAGTAGTTTTATTACCCTTACTC 1447 29 100.0 32 ............................. CCGCTCTGGACTTTGGCGACAAATGGCAAGAA 1386 29 100.0 32 ............................. CACTATCGCAGGTTACCACTCTGGCACGTAAA 1325 29 100.0 32 ............................. CCCTGACGCCCTTCCTCAATGGCTTCCAGTAT 1264 29 100.0 32 ............................. GCGCTCAATACGCTCACAGTTACCACCTGTCC 1203 29 100.0 32 ............................. ATCTCGCAGAAAGGGTAAAAAAAATGGCTGAA 1142 29 100.0 32 ............................. GCGTCCCTCGGTTGTAGGAATTGGTGCGGGCA 1081 29 100.0 32 ............................. GATTTGAGGACACCAGAGACCAAATCGACCGG 1020 29 100.0 32 ............................. GTGACCTCGTTGGAATCAGATAGCTTAGCTAT 959 29 100.0 32 ............................. GAAAACGGGAATGAGTGCAGGGTACTCTACAC 898 29 100.0 32 ............................. CAGGATTGTGGCGAGAAGAAACCAGTCAGTGA 837 29 100.0 32 ............................. GTGAGAGTTTAGGCATCAGTCGTCATCATCAG 776 29 100.0 32 ............................. GCCACAACTGCGCCATCGATTACTGCGCTGAA 715 29 100.0 32 ............................. CGAGCCTGAAATATTTGGAGTGATTTGTTTGT 654 29 100.0 32 ............................. CGTTTAATCTGTGTTTTTTTGTTAATTCTTGG 593 29 100.0 32 ............................. GCGGATCTAAATAAAATAACGTATCTGGCCTG 532 29 100.0 32 ............................. GGCACTGGCTGAACGTGTCGGAATGTCGGCCG 471 29 100.0 32 ............................. TCGACGCAGGTCGCCCGCGCGCTGCGCCAGCG 410 29 100.0 32 ............................. TTTCGTTCAAACAAATCGGTGTCGCGCTGGCC 349 29 100.0 32 ............................. GCCTTCATATCCAGACTGTCAACGTTGATTCC 288 29 100.0 32 ............................. GTGTAACCGGCGCGGCGCGGAACTCTTCCGCG 227 29 100.0 32 ............................. CAAACTCTGCTGCTAACTATCTGGCTAAAGCG 166 29 100.0 32 ............................. CGAGCGCCCTGAAGCCACCAAAGCAAAAGCAT 105 29 100.0 32 ............................. GTTAATCAGGGTTTTGTACTTATCCATGCCCG 44 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAAGTGCTTTCCGCAGGTGGAATTTCACCTCCTGAGCCCCCCGCAGATGCCCAACCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGTTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTCGGTGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACAGCTCTTTAAGAATATGGAGATGTAATAAAAAGGTTGGTGGATTGTTGGATGTGAAAAATTTCCTTATAGAACAGTTGTATAGCTTTAGA # Right flank : GACTGGGAGCGCGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30365-27529 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNZ01000006.1 Cronobacter dublinensis strain cro981W contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30364 29 100.0 32 ............................. CCATGCGCCAAACTTCTGGCGCTGGCTACAAC 30303 29 100.0 32 ............................. CATTTATTATTGAAAATGAAAAATTAATAGCC 30242 29 100.0 32 ............................. TTGTATGTCGCTGGCCGGCGCGTTTAATACGT 30181 29 100.0 32 ............................. CGGAAACGCTATATTTCCGCGCCTTACGCCCC 30120 29 100.0 32 ............................. CTATCATCTACCACATCAACCATAACAAATAT 30059 29 100.0 32 ............................. CTAAGAACGCGCAGATTGCGGAGCTTTTAGAG 29998 29 100.0 32 ............................. AAACGCACCCGTTACGACGAATATATTGAATT 29937 29 100.0 32 ............................. GTCTTATCGCGCCGTATGCGGCCAATAACAAC 29876 29 100.0 32 ............................. CACGTATATGTATATTAATCGCCGTCATTATA 29815 29 100.0 32 ............................. TGGCAATACATGCCTGTTTGACGGCGGCGGTA 29754 29 100.0 32 ............................. TGATGTGCGCTTACTGTCTCTTGTCTGGAATG 29693 29 100.0 32 ............................. TATTTCGATGATGATTGCTATCCACAGGAGTC 29632 29 100.0 32 ............................. GGCCGCAACGATCAGCACGTGACGCTTGTCGG 29571 29 100.0 32 ............................. TTCGTTGAGAAAAACCCCGAAGCAGTCAGGAC 29510 29 100.0 32 ............................. GATTAATTTATCCGCCTCAAGCATCAGGTGAA 29449 29 100.0 31 ............................. AGATTTTTTTACCGTGGCAATTTTGCGCATC 29389 29 100.0 33 ............................. TATTGCCGCCAGCAGGTGCGCCTGCTGATCGCC 29327 29 100.0 32 ............................. CAGGCGCCGACCACTGTTGAAATGACCGTAAT 29266 29 100.0 32 ............................. TCCTGACGAGTGGAGCGCAGTAGGCGTTATCG 29205 29 100.0 32 ............................. CTGGAAAACTCCCGCTGACTATCGCTATTCAT 29144 29 100.0 32 ............................. CGCGCATACAGAAAGCGCGATTACACCAATAT 29083 29 100.0 32 ............................. GTGTGTTTGTACCACTGGAGTCGTACGACATC 29022 29 100.0 32 ............................. AGGATACCATCCAGGGTGTTGTTTCTCAGCCT 28961 29 100.0 32 ............................. CACGCGGGTAGGGCAGACATCTTTCCCGGCTA 28900 29 100.0 32 ............................. AGAAAATGCCGATTGAAAACCCGACCTATATA 28839 29 100.0 32 ............................. TGGTGCCAGTCGGCAATCGTCCGTAAAAATGA 28778 29 100.0 33 ............................. CAGTTTTGCCTGCGCAACAAGGTGCCGGTAATT 28716 29 100.0 32 ............................. AACCGCAACTCCTGCGCCACTGGCGTCAGATT 28655 29 100.0 32 ............................. CCTTACCAAAGAGCAGCACGACTGGATCAACG 28594 29 100.0 32 ............................. GAGTCTTTACCAGAAAGCCACCGGTTACAACT 28533 29 100.0 32 ............................. TCAGTTCTTCTTCGTAAGCTCAACAAGGGCGA 28472 29 100.0 32 ............................. CCTTTTGAGATGTTATCTGTCCTGAAAAAGAT 28411 29 100.0 32 ............................. GTTGTCAATATGGGGCTGAGTTGGCTGTGCGC 28350 29 100.0 32 ............................. GTTACGGTCCCAGCCCGCGCTCTTACGCGCAT 28289 29 100.0 32 ............................. ACACCAGGCTGCATAAGATATTTTTCTATCTC 28228 29 100.0 32 ............................. GTGCGCGCTTCATTTTTTATCTTCCCAGCTTG 28167 29 100.0 32 ............................. TTTAGTGAGGCGGCGCAGGTGTGGGAACCTGT 28106 29 100.0 32 ............................. GACTCGTTAGAGCAGGCCTCGCCAATGCTCGA 28045 29 100.0 32 ............................. GGCTACGCGATTGGCTTTAACTGGCACGACGT 27984 29 100.0 32 ............................. TGGATAGGCTGGAGTCCGGCATATGCGAAGAA 27923 29 100.0 32 ............................. AGTGATCATGCTGCCTCCTTTTTTAGCGCTCT 27862 29 96.6 32 ............T................ CGTTACAAAATCAGATCAAAAACAGTTACCAG 27801 29 100.0 32 ............................. GGAACGAGCAAATGGCATTAAGCACTGAAGAA 27740 29 100.0 32 ............................. TAATCGGGCATGTGCGAGTTCGCGTACTGCTC 27679 29 100.0 32 ............................. GAAAGCAACAACAGAGAATAATTTGGGAAATA 27618 29 100.0 32 ............................. TGGGTGGATGTGGTGCATGCCGTCTACCCGAA 27557 29 93.1 0 ...........C..C.............. | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCACACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGATGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGCAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTCGGGCCCGAAGACGAGGTGGTCGCCGATGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCCGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTCACCGAAAGCGAACAATCTGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : AACCCATTCGCCGTGGCGCAAAAACTTACCTCTGCCAACCCCAGCCCGAATATCCAGCTTAACCACCCGCCAGGGCAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGATGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATCACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCGTCTTTTTCCGGGCGCTGAACAACATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATCAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGCATCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //