Array 1 1696163-1698771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIX010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-060 tig00000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 1696163 26 100.0 39 .......................... ATCTATCCATATCTGATTTAAAAAAAATGTACTGTCTCG 1696228 26 100.0 39 .......................... TTTTTGGACAGTAGAAAAAGTAACTGCACATGGGTCTCG 1696293 26 100.0 40 .......................... CAAAGGTAAAAGCTAAGATACCCGTTAAACTAACGTCTCG 1696359 26 100.0 41 .......................... CTGCAAATAAATCTAAGAACCTCATTGAAACTCCTGTCTCG 1696426 26 100.0 39 .......................... AAGAAGGAGTATTAACTAAGGATGATTTGAAAGGTCTCG 1696491 26 100.0 40 .......................... CTATGATGCACAAAAAGGAGGTTAAGATGTTTACGTCTCG 1696557 26 100.0 39 .......................... ACCTATCTAAAGCCGCCGGGAATGAACAATAAAGTCTCG 1696622 26 100.0 41 .......................... CTGAGATTGATATCCAAAAAACAAAATCCAATGCCGTCTCG 1696689 26 100.0 39 .......................... AGCAGCAGCCATGGCGTCTGCAGCAGCTTGTTGGTCTCG 1696754 26 100.0 42 .......................... ATTTCGTCCCTCCTGTTTTATGATGTAAAAAAGCCTGTCTCG 1696822 26 100.0 41 .......................... TGGTACAGGTTGGGCCTTATTTAAAGGCTCAGACCGTCTCG 1696889 26 100.0 42 .......................... AAGAGAAGATGTCCGACTCACCGAGTCAGAAATCCGGTCTCG 1696957 26 100.0 40 .......................... TTGTTGTGTCAAAAAAGCGATAACGATCACCCCCGTCTCG 1697023 26 100.0 42 .......................... GTTAAGGGTATTGTTTTACAGGATAACAAACGTAAAGTCTCG 1697091 26 100.0 40 .......................... AGCTCGCTTAGGGTTAATGCCAGACTCTACTCCAGTCTCG 1697157 26 100.0 41 .......................... AACTTGGGGGTTGATCAGAGTGGAGGGGTTATCTAGTCTCG 1697224 26 100.0 41 .......................... TGATGATGCTTCTTTTAACAAACGGAATAATAGGAGTCTCG 1697291 26 100.0 40 .......................... AATGTTAAAAACCTCTTCCTAGAATGATTGTTTAGTCTCG 1697357 26 100.0 40 .......................... AGAGAGACGAGATAAATCAGAATTGTGTTTTAAAGTCTCG 1697423 26 100.0 41 .......................... ATTAAGACGCATGTAAATCCTGATAGTAATACTGCGTCTCG 1697490 26 100.0 40 .......................... AACAAGCCAGTCTCGTGCAATTTGGCAGTTTGCCGTCTCG 1697556 26 100.0 39 .......................... ATTCCATAAATTAGCAACAGGGTACCAACCAATGTCTCG 1697621 26 100.0 40 .......................... CATGGAACCCGAATATCACTCTGGGGACTATGTCGTCTCG 1697687 26 100.0 40 .......................... ATAAATAACTTCTGACTTAATTGATTTAATTTTTGTCTCG 1697753 26 100.0 41 .......................... GAGAGGTAGGCCGACAGTGCGCCATTTTTTACCAAGTCTCG 1697820 26 100.0 41 .......................... CTTTGATGCGACTATCTAAAATCTCAACAAAGTCGGTCTCG 1697887 26 100.0 39 .......................... CTGAAGCAATAGCTAACAATCCCGCTTTACAATGTCTCG 1697952 26 100.0 40 .......................... TAAACTTGATGTTTCTAAACTGACTGATAAAGACGTCTCG 1698018 26 100.0 41 .......................... ATCTGAAAACTAACTTTTTTGCCTCCTTGTGTCTTGTCTCG 1698085 26 100.0 41 .......................... TGGTTCATTTACCGGTGCTGTTTGAGTAACAGGTGGTCTCG 1698152 26 100.0 42 .......................... AGTCACAACCTCCCACGATCTCACAGACTCATGCGGGTCTCG 1698220 26 100.0 40 .......................... AATTTCAATGGAAATGATTGCCTTATTACACGCTGTCTCG 1698286 26 100.0 39 .......................... CATTAAAACAACCGCATCTGCAAGGATTGCTTCGTCTCG 1698351 26 100.0 40 .......................... GGTAGTCACTGGCGTTGAACCATCAAACAAAGCAGTCTCG 1698417 26 100.0 39 .......................... GAAGTTGAAATTGTCGAAAGGTACTTGAATCTCGTCTCG 1698482 26 76.9 41 ..TTTC.T.......C.......... GATTGCTTTTGGAGTAAAACCGATCGGCTTAGCTTGTCTCG 1698549 26 80.8 41 ..TTTC.T.................. GTTTGAATCAGAAACACGTGATACAAAGCTTGGACGTCTCG 1698616 26 76.9 40 ..TTTC.T.......C.......... CTGAAATTGCCCCTGCTGAAAACATGAAATTAAGGTCTCG 1698682 26 80.8 37 ..TTTC.T.................. GCGATACGTGCCTTTACGATGTTGCGACTCCGTCTCG T [1698706] 1698746 26 61.5 0 ...TT.GT...T.C....T.C.T.T. | ========== ====== ====== ====== ========================== ========================================== ================== 40 26 96.9 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : TATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACACTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAATAAAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : TCTTTGTTTTTCATGAAGGGGTAAATCATATTGTATTCATCAAGCTGATTTATGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATTATCTCAGCTAGACTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGTTGATAGGACTTTGCTGATGGCCTAGTCAGGCATATCGTATCAAATTCAAGTTTTTTCATGTCACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAGGCATTTTGTTAGATTCTGATGATTCTAGGTCTATTACTATTTTTGGCAAGAAACTATATTGGT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //