Array 1 246756-246989 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJFB010000001.1 Streptococcus pyogenes strain NS32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 246756 36 100.0 30 .................................... ACAAAACAAAGTAACCTTGATGGCTATTTT 246822 36 100.0 30 .................................... CGCTGCTGGCTGCATGCTAATAACACGGCT 246888 36 100.0 30 .................................... TGGTCTAACTGCGTCTGGTCTGTGAATGAT 246954 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CGATGCCGTTGACATCACCAGTATCCCCTTTGTTTTAGAGCTATGAAAATCTTTTATTTATGATATAATGATTTGTGTGTAAATATGCGCTTCTACGGCGTGTATTTTTTTGTTTCCAAAATATTTTCTGCGTATTTTACCGTGCTTTTTTGCCTTCTGTCGGGGAATTCAGTCGGGAAATATTATTGTCTAAAAAAGCTGAAAATGTGTCTGTAACTTGAACAGATAGTTCATCGTGTACCTGATTATATTTATCAGTCATATACATTTTTGTGTGGCCCAGTGCTTTACTGAGAGCTTCCATGGGAACCCCAGCAATTATGCTTTGAGTGGTAAAAAAGTGTCGCATCATGTGAGGGGTGACACGAAAACCAACACTCTCATTAACTTTCTCAAATTCATCATTGAGTTTGTTTGGATTAATGAGATTACCGTCTTCCTTAATGCTTATATAATCCCATTCTTTGTCTTTGATGATGGAAAGTCGTTTTTTGATAGCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 2 259503-259736 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJFB010000001.1 Streptococcus pyogenes strain NS32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 259503 36 100.0 30 .................................... ACAAAACAAAGTAACCTTGATGGCTATTTT 259569 36 100.0 30 .................................... CGCTGCTGGCTGCATGCTAATAACACGGCT 259635 36 100.0 30 .................................... TGGTCTAACTGCGTCTGGTCTGTGAATGAT 259701 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CGATGCCGTTGACATCACCAGTATCCCCTTTGTTTTAGAGCTATGAAAATCTTTTATTTATGATATAATGATTTGTGTGTAAATATGCGCTTCTACGGCGTGTATTTTTTTGTTTCCAAAATATTTTCTGCGTATTTTACCGTGCTTTTTTGCCTTCTGTCGGGGAATTCAGTCGGGAAATATTATTGTCTAAAAAAGCTGAAAATGTGTCTGTAACTTGAACAGATAGTTCATCGTGTACCTGATTATATTTATCAGTCATATACATTTTTGTGTGGCCCAGTGCTTTACTGAGAGCTTCCATGGGAACCCCAGCAATTATGCTTTGAGTGGTAAAAAAGTGTCGCATCATGTGAGGGGTGACACGAAAACCAACACTCTCATTAACTTTCTCAAATTCATCATTGAGTTTGTTTGGATTAATGAGATTACCGTCTTCCTTAATGCTTATATAATCCCATTCTTTGTCTTTGATGATGGAAAGTCGTTTTTTGATAGCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], //