Array 1 195589-195791 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNYG01000001.1 Escherichia coli strain HH18C NODE_1_length_333243_cov_178.301264, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 195589 28 100.0 33 ............................ AACCTACCGTCTTGGCTAGCGGTTGCAGCGAAC 195650 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 195710 28 100.0 28 ............................ TTCACAGGTAACATACTCCACCCACCAT 195766 26 85.7 0 ................A...-A..-... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCGAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCACTGGATAAAGCGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAACTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13819-15557 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNYG01000061.1 Escherichia coli strain HH18C NODE_61_length_15682_cov_186.747773, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13819 29 96.6 32 ............................T TCAGTTTTAACAGCCTGAACATCAGTATTAAT 13880 29 100.0 32 ............................. CCATTGCGCACTTTAAGTAACCCCATATCCCC 13941 29 100.0 32 ............................. TTCAGAGCGATATCTACGACCGCACCGCAGGC 14002 29 100.0 32 ............................. GCGACGATATCCAGCGGAAGCTGGTCAAAGAT 14063 29 100.0 32 ............................. CTGAGTGTCATTCTGCGCGGCTGCCAGTGTAT 14124 29 100.0 33 ............................. CTGTTCTGCGGTCAGTTTCACCGCGTGCTGGCC 14186 29 100.0 32 ............................. ACATAACTCCGCGTTTTAAGGCGGAGTACGTA 14247 29 100.0 32 ............................. CCAGATTGAACTGCTGTAGAGGACTCACGATA 14308 29 100.0 32 ............................. TTATTGAAGCAAGTGAATTTAAACCGGGTAAA 14369 29 100.0 32 ............................. GTATGTTCTTATCCTTCTGCGTTAGTGAACGT 14430 29 96.6 32 ..........T.................. CTGATAATGCTCGTTCTTTATATACGAATATT 14491 29 100.0 32 ............................. TATTCCCGGATGATGCGCAGTTCATCGAGATT 14552 29 100.0 32 ............................. CGTTTGTAGATACTGCAACGAAAGTTGAACTG 14613 29 100.0 32 ............................. TCAACGTTATCCGCGTGTTCGACAGGATTAGT 14674 29 100.0 32 ............................. CTCGTTTGTATCTCGTGGGGTATGCTGCAGCG 14735 29 100.0 32 ............................. GTCTGTAACCCGTTCGGAAGGTGGTAAAGTCC 14796 29 100.0 32 ............................. ATGAGGCCGGGTGTGTGGTGGATATCACGGGG 14857 29 100.0 32 ............................. GAGATTACATTTGCTGACCAGGCTGTCCGGTG 14918 29 100.0 32 ............................. TCGGTTGTTAAATCCTTTATTTTTCAACCAGT 14979 29 100.0 32 ............................. CAAGGGGTATAGAGTTTAATCTGACAGAAGAT 15040 29 100.0 32 ............................. AACGAAAAACAGTTCGGCCAGTTGATGGACGC 15101 29 100.0 32 ............................. TCATTTTGCTGGCTGTTTTTTTTGCCACGCCA 15162 29 100.0 32 ............................. GTGAACGGACGGCGTCCGGTACGTTCAATACC 15223 29 100.0 33 ............................. ACACCGAAGATGGCCCGGTTTGTGTCTGGTTGC 15285 29 100.0 32 ............................. ATGCTGTCAGCCATCAGGGCATGCGGCTTTGC 15346 29 100.0 32 ............................. GGATTAAACGCCATTGCCCGCCGTTTGCGGCT 15407 29 100.0 32 ............................. ACCTTGTGCGCTGTGGTGTTGATGTCAGTACG 15468 29 100.0 32 ............................. GTTGGTAAAATCGCCATACCGCGATAATGAAA 15529 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACGACCCGCGCCAGATATGTTACCGCCAGCCATCCCTGAACCTGAAACGCTGGGTGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTGCGTGCTGGCGTTTATGTCGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCTGCAAATCACCCAACTGGCAGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACTTGGGGAGAAAACAGACGTATTCCGGTAGATTTGGATGGGTTACGCTTGGTTTCGTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : AAGCGTCGTCTGAGTACCGTCTGGTCCCGAATCCAGGATCCTGTAACTTGCAAAATGGCATCTGAATCGATCGCAGTTTGGCGGCGTTTTTCAAGGTAGTTGTCGCCTTTTGTAATAAAATTACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 60356-59229 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNYG01000015.1 Escherichia coli strain HH18C NODE_15_length_86224_cov_184.256155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60355 29 100.0 32 ............................. AAATATTAGGGTTTCGCGCTACGTTCGACACC 60294 29 100.0 32 ............................. GCGGGGATTTGTTGGCGAAACAGGTCGGCGTC 60233 29 100.0 32 ............................. AAATTATTTTTTGGGTGTTAAAAACCAGATTC 60172 29 100.0 32 ............................. ACGGAACGACCAGTGCGGATCACGCGTGCTGG 60111 29 100.0 32 ............................. CCTCGCGCACAGTTTCGCCAATTCCTCTACCC 60050 29 100.0 32 ............................. GGCTGGCAGCGTATCCTGGTGCGTGAATTAAC 59989 29 100.0 32 ............................. CCGAGTAAGTCGAGTTCACGGGCGCGGGATTC 59928 29 100.0 32 ............................. AATTTCCCGAGTTGGCCGCGGGCCTGCATTTG 59867 29 100.0 32 ............................. TGTTAATAAAAAAGGCCGGTTTCCCGGCCTGA 59806 29 100.0 32 ............................. AAGCAACAAATGCTGTATACGGCACATTTATA 59745 29 100.0 32 ............................. CCCTCGATCTCGATGCCCAATCGCACAGCGTC 59684 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 59623 29 100.0 32 ............................. CCCTCGATCTCGATGCCCAATCGCACAGCGTC 59562 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 59501 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 59440 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 59379 29 93.1 32 .T..........C................ ATTTCTTTAATTATTTAGCTGATGCTTTTAAA 59318 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 59257 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGATTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //