Array 1 67-5244 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIK01000060.1 Mycobacterium shinjukuense strain CCUG 53584 Mycobacterium_shinjukuense_CCUG53584_contig60, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 67 36 97.2 36 ...C................................ ATCGCAGCAGGTTTCCGATGAGTGATGTTTTGCCGG C,AAC [68,74] 143 36 100.0 36 .................................... GAGCGCCGGCCGACAGGTCACCCGACAGGGTGATGT 215 36 100.0 37 .................................... TGGACACTGTCATTGGCGATGTCGAAAGCGAACTCAT 288 36 100.0 36 .................................... TTCACCACTGGCGATGCTGTAGTCGCGGCTGCCCCT 360 36 100.0 36 .................................... CACAGGGTTGGGGTTGCCGCCGCGCCCGTACAGCCC 432 36 100.0 40 .................................... CTTCTGACCTCCTGTGTGAGATGACTACGTGTCATCAATG 508 36 100.0 35 .................................... CTGGCCGGCCACACACGCAGCAGATGCCCTGCAGT 579 36 100.0 35 .................................... CACTCCGCCTTGGCCGCCCGCGTCAACGAGGTTGA 650 36 100.0 38 .................................... AGGCGAATCCGGATGGTTTGCACACCATTTGGCACGGT 724 36 100.0 36 .................................... CTACACTATGCCCTGCCCTGACTGCGGTGCCCGCGT 796 36 100.0 38 .................................... CTGCGGCACCTCGTCGGCGAACCTGCTGATCGTGTCAA 870 36 100.0 36 .................................... CGCAAACCCCATCTGGTGCAGACTGCCACCAGTGGC 942 36 100.0 35 .................................... GTGCCCACTCGTTCGTCGTTTAGTGCCAGCAACAC 1013 36 100.0 37 .................................... GCGAGACCGGCGATACGAGTGCGCGTCCACTGAGCGC 1086 36 100.0 37 .................................... CGCCACCACGCCACTACGACTGCGCCGATACATCGGC 1159 36 100.0 36 .................................... CGCTGACGTTTCAATGGGGGGTTGACACACCCTAAT 1231 36 100.0 36 .................................... CTGACCTGCGGCCTGTGGCTGCCGGTGTGGCTGATC 1303 36 100.0 36 .................................... ATTATCTGGCGCCAACACCGTCTCCGCCGATGACAA 1375 36 100.0 35 .................................... TACACCTTGGGCAAGTTCACCGCCCCCCAAGAGCA 1446 36 100.0 35 .................................... ACGGTGCCGACCCTTGCGTCCCACGCGGGATGGGT 1517 36 100.0 35 .................................... TCGACATCGACCCACCCGAAGGGATGCGATCACTG 1588 36 100.0 35 .................................... AGGTTACATCCGCGATGTACTCAGCGTGCGGGATT 1659 36 100.0 36 .................................... ACGTCGTTTTGGGTTGAGGTGCAGCCGTTGATGCCG 1731 36 100.0 35 .................................... TATCATACATTCGCTGAAACTCGTGGAGCCTGCGC 1802 36 97.2 37 ...............................C.... CCGGTGGTGCCGCGACGTTTAGCGATCACAATTCCAA 1875 36 100.0 37 .................................... TTGTATTGTGCCGCCAGTATCGCTCTTCCCCCTAGTG 1948 36 100.0 37 .................................... CGGTGAATCCGCCGCATGTGTGACGCGGCGCAATCCA 2021 36 100.0 35 .................................... CGTCTGTTTCGCTCGCTGCTGATGAAACTTACGAA 2092 36 100.0 38 .................................... CTGCAGTCGTAAAGGTCGGGGCCGACACCGCCAAAGCC 2166 36 100.0 34 .................................... TCGCCGGCTTTAGTGAGGGCTTGGCCGCTGCGAC 2236 36 100.0 36 .................................... AGCATTAGGCGACCCCGACCTGCTGCGGGTCATCGC 2308 36 100.0 40 .................................... TGTCGGCCATCTTGGAGCCCCCTGGACCGCATCTGCGCAA 2384 36 100.0 36 .................................... GGTGGGCCGCGACGTCATCAAATGCGCGTCGTGCGG 2456 36 100.0 37 .................................... GTTCGCTTTGGTGCGCGGATAAGCGTTGGGGCACGGT 2529 36 100.0 37 .................................... GGGGACCCCCCAACCGGCGCAGTGCTCGATGCGGCCA 2602 36 100.0 40 .................................... CTCGCAGCGAGGCACCCCTAAGCGCGTAGCCGAGCGCCAG 2678 36 100.0 39 .................................... TTGAACCGCTGCTGCTGCTCCGGCGAAAGAAGTTGAGGG 2753 36 100.0 37 .................................... GTTTGACAACTGGCTGATGGGGCCGGTACGGGATGCG 2826 36 100.0 37 .................................... GTGAGTCTGCGGGCTTTTTCCGACCACTTGTGCGGGA 2899 36 100.0 36 .................................... TGTGACGAATCCGCCGCCCCGTCGACCACCGCTCGA 2971 36 100.0 36 .................................... CCATAATTGGGTGGAAAAGGGGACGCGATAACCGCA 3043 36 100.0 35 .................................... GCGATCCCCTGGTATCCGTGCTCGGGATGCCCCAG 3114 36 100.0 39 .................................... GGGCGAACCACGGAGGCGGCGCCTGCTAGTTTCACTGGC 3189 36 100.0 36 .................................... CGCCGGGCAGCCGTATCGCCCGTAGCTGTCCGCGCT 3261 36 100.0 37 .................................... ATGGCCTGCAGTACGCTAAGGAGCAGGGCTTTATCAC 3334 36 100.0 37 .................................... ACGTGGTGGCGAAAGTTGCGCGCAGCCAAGTTATTTG 3407 36 100.0 36 .................................... TAAATGCCGGCCAGGAGTGTACTGCTCGTCCAGCCC 3479 36 100.0 35 .................................... CTGGTGCACCAGTCCGTCTGCTCGAAGTAGGCAGG 3550 36 100.0 36 .................................... TCGGCCGGGTTGGCGATATCGGAGCCGGTGCTGCTA 3622 36 97.2 38 ......................T............. CGCTTGTAGAACAAGCATGTAATTGTGGAATGCAACCC 3696 36 100.0 38 .................................... CGGCCCTCGTAGGCGGCCCCGCTAGCAATCTCCTCGGT 3770 36 100.0 39 .................................... CCGCACGTCGGCGCCTTCTGCTCGGCGCGCAAATAAATT 3845 36 100.0 37 .................................... TCGTCTGCAGATCAGCTCGCGCACGGTCCAGCGCTGG 3918 36 100.0 37 .................................... GTGGCGGACATCATCGACATCATGGCAAGTCCAGCAA 3991 36 100.0 36 .................................... AAGTCCTCGACGCGTTCGCCATCACCGCGTCACCCA 4063 36 100.0 35 .................................... GCGGCCCGGGGTTGATGATGTGATGCGAATGTTGC 4134 36 100.0 33 .................................... CGGGGTCGCACCGTTGTCCATGAACCGCTGCTT 4203 36 100.0 35 .................................... GCGTACATGGCGAGCTGCGCGCCGGTGGAATGCGG 4274 36 100.0 36 .................................... CGACTGCACTGCGAAACCGGGCCGGCCGTCGCATGG 4346 36 100.0 34 .................................... ATGCGACCGACATTTCCGGCACTGTCACCGACGA 4416 36 100.0 40 .................................... TCGTGTCGGCGTCGGGTGTCATCGTCGGCAGTTGCGGGCC 4492 36 100.0 33 .................................... CATCCGTCGGCCGGGGGGAATGGTTCGGCGCTC 4561 36 100.0 37 .................................... CACTACTTCGCCGACCTCTTTCCGCGGGTGTCGTTAA 4634 36 100.0 37 .................................... CTGCTTCCGCGGCATTTCCGCCCACACGGTGGTGATG 4707 36 100.0 36 .................................... CGTTACATGCTTCATCATCGATCACGCCTTTCCCAT 4779 36 100.0 36 .................................... CGTACACGTTCACGGTGCGCGGCGGAGCGGCTGGAA 4851 36 100.0 37 .................................... CTGGCGCTAACTTGGCTGGCGCTAGCCTGGTCAGTGC 4924 36 100.0 34 .................................... CTGCGTACTAAGCGGGTTAGCACTGCTGGACCGC 4994 36 100.0 36 .................................... CGTCGCCGGGGTCCGCGAAATGGTCGCTGCCGTCGG 5066 36 100.0 35 .................................... ATGACGCAGATGGCGTATGGTGGCGCTTATGACGA 5137 36 100.0 36 .................................... ATGCGATGACCCAAACTGCGGAGGTGACTGGTGAGC 5209 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 72 36 99.9 36 GCCTCGATGAAGTGCGGCCGCCGAAACGGCCGCCGC # Left flank : CCCAACCGGCCGACACGCTCCTCACCGTCAGCGCCGGAACCCTACCCCCGCGTGCTCACCCTGAATG # Right flank : CAGCCTGGCCAATTCTATGCTCCTGACCAGGCCGTTGAAACCCCTTCGCGAGGGCCCGCGTAGGTCAGACCCATAAGGTGGTCAGCGTCAGGCGTTCAGTACACGCGAAACATGCCCTGACGAGGATAGATGGCGCGCGAGAGCCTGCTGGAAATATCGTTTCCACGCGGGTCTCGCGAGGCAGATTAGTTTAGGTGACAATCGGGCCGCTGGTCATGATCGGTCGGGACCGTCCGATGAACGCGAACCTCCCATGATCGACATTCTGGACCAACCCGAGGTCGCAGAGCAGCACCGAGTCCAGGGCGGTGACGATAATCGTGGATATTTCGTTCTTGAGACGCGCAATGCGTGCCGGGCTCGCATCGACGACGAAAACGCTGTACTGGACGCGATCACCGTGCCGCTCCAAGCGTTTTGCGAGTCGGTCACGTCTGCGATCGTCGGGTATATCGTAGGCAATCAAAAAACGGCGCGCGTCGCTCCGACTCATCGCGTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGATGAAGTGCGGCCGCCGAAACGGCCGCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 203-741 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIK01000024.1 Mycobacterium shinjukuense strain CCUG 53584 Mycobacterium_shinjukuense_CCUG53584_contig24, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 203 36 100.0 35 .................................... GCGGCCAGGCACAACCATTGCATACGACTCGCCCA 274 36 100.0 36 .................................... CAGCGGGAAACCCTGCGGTCAGTGGCGATCGAGGGA 346 36 100.0 35 .................................... CGACTGATACGGCGACCGCCGCAACGGCTCAACCG 417 36 100.0 38 .................................... CTGGAACAGTCACCCATTTAGGGTGCTCAACGCCGGGT 491 36 100.0 36 .................................... GCTGCTGCCACGCCCGGTGGTGCGCGCAATCTTCCG 563 36 100.0 36 .................................... AGCTACTACCTAGCAAGGGTCCGCCGCGTATGGCAG 635 36 97.2 35 ........T........................... TCTCCGAATCCATTGCCGCGGCGGCGAGTTCGCTT 706 36 97.2 0 ........T........................... | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 99.3 36 GCGGCGGCCGTTTCGGCGGCCGCACTTCATCGAGGC # Left flank : CGCACAGCCATCGCCGAAGTCACGGCAGACTGAACACCACACCGACACCCTAGCCACCACCGACCCCGCCGGACACCTCCCGGCGGGGTCATTTCATGCCCACACGTTCTCATCGCCAACGCCGCCATCATGCTCATCCTGAATGCCGGTCAACAACTTCATCGAGGCTTGCATGCACTGCATGCTGCCCGCATGTTGGCCGG # Right flank : CTCCCACAAGCTCGGCCCTCGCAAAGCACGTGACATGCGGCTGAACCATCCCGGGTTTCTTACACACCATTGCGGCAGCCCGGCGTCTACAGCTGACGTGGCGCCATCACCCGTCTCCCGGGCGAATAGGCCTGGGCTCCATTGCGGCGTCTTCAACGAACTCGGCAGCTAGTGGCAAGCACCCGGGTCCGCAAGCACGATGTATACATCGTATATTTGATGGCGTATATTTGCCGGCGTGAAAAGGCTGCAGATCTACATCGACGAGGACGTCGACCGAGCGCTTGCCGTTGAAGCACGACGGCGGCGGACGTCGAAGGCCGCGCTCATCCGGGAGTACGTCGCTGAACACCTCCGGCAGCCGGGCCCAGATCCGGTCGATGCCTTCGTCGGATCGTTCGACGGGGGAGCCGACTTGTCCGCGTCCGTTGACGATGTGGTTTACGGAAAGCGCGAATGATCTTCGCCGACACGTCCTTCTGGGCCGCACTTGGCAACGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCGGCCGTTTCGGCGGCCGCACTTCATCGAGGC # Alternate repeat : GCGGCGGCTGTTTCGGCGGCCGCACTTCATCGAGGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //