Array 1 189547-186897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYI010000003.1 Klebsiella pneumoniae strain 2307 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 189546 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 189485 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 189424 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 189363 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 189301 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 189240 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 189179 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 189118 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 189057 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 188996 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 188935 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 188874 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 188813 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 188752 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 188691 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 188630 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 188569 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 188508 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 188447 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 188386 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 188325 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 188264 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 188203 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 188142 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 188081 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 188020 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 187959 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 187898 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 187837 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 187776 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 187715 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 187654 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 187593 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 187532 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 187471 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 187410 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 187349 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 187288 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 187227 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 187166 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 187105 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 187044 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 186983 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 186925 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1332-329 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYI010000049.1 Klebsiella pneumoniae strain 2307 49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1331 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 1270 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 1209 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 1148 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 1087 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 1026 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 965 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 904 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 843 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 782 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 721 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 660 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 599 28 93.1 32 .....-.......C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 539 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 478 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 417 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 356 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATAT # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //