Array 1 59095-59649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLCJ010000043.1 Brevibacillus agri strain JS1-R2 JS1-R2_contig_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 59095 36 97.2 37 ..........A......................... AGTTGCAGCACCACGCTTACGCTTTGGCGGTAAACCA 59168 36 100.0 36 .................................... AACGGAAACGTATAGGGTGGTTAGCCGATCAGATTC 59240 36 100.0 37 .................................... GTAGCACAAACATGAAGAAAAGTACAGAAAAACTGTA 59313 36 100.0 38 .................................... ATCGGTCTGCTCGGCCTGACGCTCGGCGCTAACGCGAG 59387 36 100.0 36 .................................... GTTCACCCAAGTCAGTTTGCCGCGATTGATTCGGAG 59459 36 100.0 40 .................................... GCCAGCTCGTCAGATCCGGAAAAAAGTATACATCAATCGA 59535 36 100.0 43 .................................... CTGTTGTTTTTGCCGACGGTTCATGCAGCTGTACTAGCATCAC 59614 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 8 36 99.7 38 GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : CGAAAAAAAGCTTTTCGACTTTTTTTGTTGGACACGTGGCAATTGTAGGACCGGACTACGATATCATTCACGTTCATCCAAAAGGACCTTGGTTCGTTGAAGATATCGATTACTATGTATCTCGATTTAGGGACGGCGATAAGATCGAAGTTCTCCGTCCCAGGAGTGGAGCTTCTAAAGCTGCTAAATGGGCAATCAACCATATTGATGACGTAAAGAAATACTACTTCAATATGGACTTGGATAATATTGAGCTTAGTTATTGTTCTAAGTTCATCTGGCAAGCATTTTACTATGGTTATAATCTCGATATTACCGGCATGGGTCTTACCGATCGCAGTAGAGCAACCCATATTTATCCAAATGATGTTCGAGATTCCGATCACCTTGCATCAACAGAAACCATCGACGTTGAGAAGTAAGAAGCTGAAACCTCGCATTAGCGAGGTTTTTTATTTGAGCGCCGATTTAAGATCTCAGTAGTTTAGACGGACTTTAGC # Right flank : CTCCTTCCCACTCAACCCCTACAGCCGCAAGCCTTACAGACCCGTTTTTCGAGCAAGCCAAAATTCAATCGCCATTCCTCTTATCCACCGGCTGCCTTTTCCCCTAAAAAACTCTGGAAAGCCTACGCCCACAAAGAGTTCGAGCATCCCCCGGCTTTTTTGACCTGAGAGGATGCTCGCATCATAAAATTCGAAAGCTTAGTGGAAAGTCGTGATTATCCGTGGGAATAGACCTGTGGATGGGCCCATAATGCACACGCACGGATATGTAAGTCGACTTATGGCCTATAGCGTGCGACTGACACCTTTATTTTACTCTTTTTCCACTTTTGTTACAACTAGCTTTCTTCATTCCTTAATAGATAAATTTGGTCAAATCGCGAGGCAGAAACTCCCTGCCAACAGTAGAAATCCGCTTGTCCAGTTGATCTCTCGTCACTGGGCCGATTTTTACAAACATGACCTGGTCTTCTCCATGGTGAACCAGCTCAGCCAGGCTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 65873-68444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLCJ010000043.1 Brevibacillus agri strain JS1-R2 JS1-R2_contig_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 65873 36 75.0 30 ...T....TTTC...G...T...C...T........ GATGAAAAGGAGCATCAAGTTGGACAAGCT A [65890] 65940 36 94.4 38 .......C.A.......................... GCTTACAGCTTCCGGTCAACCCCGCATCCATCCGCATA 66014 36 100.0 39 .................................... CACTAGCTGCCATCACATACACAAACTTTAAGAGGAGTG 66089 36 100.0 35 .................................... TTAATATCTTGGTTGTAGTTGCGCAAACCTTTTAT 66160 36 100.0 34 .................................... TCAAGATCGAGGCACTGTACCCGGGCACGAAAGG 66230 36 100.0 38 .................................... TGAGGACGACGATGACGGGGAGGGCGCGGATGGCTTAC 66304 36 100.0 37 .................................... GCGACACGACCGTATTCGTGGACGAGCCGGTCTTTGT 66377 36 100.0 34 .................................... GAAGCTCAACAGGCTCAGGTCGAAAAGTTACGCG 66447 36 100.0 39 .................................... TTTCACGTCATCGTCCTCCTTGGGTTTAGCTTTTTCGCG 66522 36 100.0 36 .................................... CTTGGTTGTCCCCGTAACTACTGCGCAGCGCTGTAG 66594 36 100.0 40 .................................... CTCTCTTTGGTTTCTATGCGAACGTTATTTCGCGGCGCGA 66670 36 100.0 36 .................................... CAGCAGATGGCGGTCGAACTGAGGCGGCATCAAAAC 66742 36 100.0 36 .................................... ACGGAGAAATGCCCGAGGAAGTGCAGCAGCGTTTCA 66814 36 100.0 37 .................................... CCGTAAAGGAGCGTGAACGAACGATGGCAACACGTAG 66887 36 100.0 34 .................................... TATGATTGAACCGTGGTCATTTCTCTTTAAAGAG 66957 36 100.0 37 .................................... CTAAACGTCGAACGGTCGGGCACCGCCAGCAGCGCCT 67030 36 100.0 36 .................................... GTTGTAGACTTCGTGGGGCGGGATGCCGTGGCGTTG 67102 36 100.0 37 .................................... GCGGGAGCCGAAAACATTTAAGGGAGGTGGTTTGATT 67175 36 100.0 39 .................................... ACTGGATACCAACAAGAAAACAGTCAACCACATACTGTC 67250 36 100.0 34 .................................... CCTTGTTGCAAAACCACTGATTGACGCTCTAACT 67320 36 100.0 37 .................................... TGTCACCAATCAGCGAACTAAAGGTCAGTGTAGGGTG 67393 36 100.0 39 .................................... GGAGGTTTTCGTCATAATACCGCCCCCTTCGTATCGTCC 67468 36 100.0 35 .................................... AAGAATGTGTGCGAAGGGCAGACTAGCGTCGCAAT 67539 36 100.0 34 .................................... GAATGAAAGCCATTTGAAAAGACTGCCCCCACGC 67609 36 100.0 35 .................................... AACGTCATCTTGACCAACACTGAAAGGCTTAGCCT 67680 36 100.0 37 .................................... CGTTGCCATCTTTGGTCACGACGCCGCATACGTCCGC 67753 36 100.0 39 .................................... GGTGCTATAAATTTATTTAAAGAGTTTGGAGGGCTAAGA 67828 36 100.0 37 .................................... TTAAACGCCTCGGCCGCGTCCTTTACCGGATCATCGA 67901 36 100.0 38 .................................... CCCATTGGGCACCGCGCCCCTTCCGACGCTTACCGTAG 67975 36 100.0 38 .................................... GATCCGCAAGGTGATTATGACGGCCAGGTTCCGACACT 68049 36 100.0 39 .................................... TTTACGCGCAATGTGATTTGCATATTAGTCCCTCCTGGT 68124 36 100.0 35 .................................... CGAAAACGGCAACGTCCGCACCTATACACCCATCT 68195 36 100.0 36 .................................... GGCTCACCCAAGGCGACCGAATCCGTAGGGAAAGGC 68267 36 100.0 34 .................................... CCTGCGCCGCCGTAAATATTAAGAGTCGCTGCGT 68337 36 100.0 36 .................................... GGTACTATCGGCAGTGGTAAGTCCTATCATGCGCTT 68409 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 36 36 99.2 36 GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : CGCTTGTCCATGACGTTATTTCCTTTCTTTACTAAGTATGATTTTTGAATTTCAAAAAAAATCGAACATCTATAAGGTATAATATACTATCAATACTAACAGCTATCAATTCTTTATTTAAAAGAGAGTAAATGCTTGTTGCATTTTTCTTCATGTACTATACTTACTAATACGAATTATAGGTTCGTCTAACTTTAGTGCGTGTGCATTGGGTGATTCAAACAATCACTTCTCCACTAGAAGCTTATTACAAAGCTTGCACTTTATTTACAAAGAGAAAAGCCAATGCTCTCCCTTTCCAAATGAAACCAGTTTTCTTTTAATCCATTTTTTGCCTGACTGCTTCTTTTTTGCAAGAAAACGTATCGAGCACCTGTAAACCTCTCACTATGACTATTGAATTTGGTATATATTATTATCAAGAGATCAATGATTTTGAAGTTCACTATAGGTTATTTAATAGAAAGATGCCCCTAACGTAAAGCAGGGGCATCTTTGAT # Right flank : CCCCTGTCTTCTCAATCCCTTGATTCTCAGGCTTTTCTCAGCCCGTTTTCGAGCAGTCTTTTTTTAGGTACCATTTTTCTTGAAATTCAAGGAGCTTTTTTCTTTCCAACTCAGTTTGACGCCTACTCTCCCAACGCTTGCGAGCATCCTTGGCGTTTTTAGGGCTGGGAGATTGCTCGCGTCTTCATTTTTCGAAAGCATAGTGGAAATTCGAAATTATCCGTGGGAATAGACTTGTAGAGGGTCTATAATGCACACGCACGGAATATCAAAACGGCCTGTCGCCTCTAGCATACGGCCGATACTTATATCTTACTTTTTTTCCAAATACAACACAACCGCGATTTGATCCACCCTGTAGAAAATCACCACTCAAGACCTCACTCCTTTCAAGTCGCTATTATAAATATTAAAAAACCGACCTCATTCTCTTGCGAATGAAGTCGGCTCTCCACTCTGTTTCCTGCATCAAGAACCGAGGCAGTCATCCTTTCGCTTGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //