Array 1 6546-7489 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCO01000020.1 Escherichia coli strain CFFY142 CFFY142_scaffold20.1_size66993, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6546 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 6607 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 6668 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 6729 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 6790 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 6851 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 6912 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 6973 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 7034 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 7095 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 7156 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 7217 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 7278 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 7339 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 7400 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 7461 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGTCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48134-48997 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCO01000021.1 Escherichia coli strain CFFY142 CFFY142_scaffold21.1_size66125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48134 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 48195 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 48256 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 48317 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 48378 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 48439 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 48500 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [48524] Deletion [48541] 48542 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 48603 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 48664 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 48725 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 48786 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 48847 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 48908 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 48969 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //