Array 1 47218-47787 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIHI010000005.1 Escherichia coli strain PBIO848, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47218 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 47278 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 47338 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 47398 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 47458 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 47518 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 47578 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 47638 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 47698 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 47758 28 85.7 0 ....................A...C.CT | T,C [47778,47782] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 56844-58132 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIHI010000005.1 Escherichia coli strain PBIO848, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 56844 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 56904 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 56964 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 57024 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 57084 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 57145 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 57205 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 57265 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 57325 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 57385 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 57445 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 57505 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 57565 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 57625 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 57685 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 57745 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 57805 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 57865 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 57925 28 100.0 32 ............................ GTAAACGGAATTAGCAGCAGCATGATCAAAGA 57985 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 58045 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 58105 27 92.9 0 .......................-C... | T [58125] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAATACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //