Array 1 43312-43862 **** Predicted by CRISPRDetect 2.4 *** >NZ_LTBB01000003.1 Clostridium colicanis DSM 13634 CLCO_contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 43312 36 72.2 84 T..T...C.A..GG....C.G.T......A...... AGAAAGTAGGCAAGTTTGGATGACTGGCTTATTAAATTCTCGATGCGCTATAATTTAAATTCTTCCGGAATATTTTCGTCAAAA 43432 35 91.7 30 C....-.......G...................... CATAGACATTGAAATGGCATTAAGAGGCGG 43497 36 100.0 30 .................................... TAATATTAAGCAATAGAAATGCAAACATAT 43563 36 100.0 30 .................................... CATAGACAGTACAGAAGAATTATTAGAAAC 43629 36 100.0 30 .................................... CAGTAAATGGAAAATTAAATAAAAAACCTA 43695 36 100.0 30 .................................... TTGTAAAACAATATCAATAAGCGGTGATAA 43761 36 100.0 30 .................................... TATGAACCGTTTAGAAACATCCATTTGCTA 43827 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 8 36 95.5 38 GTTATAGTTCCTAATAAATTTTCGATATGCTATAAT # Left flank : TGAAAAGTACCTTCTTTAACAGTAACCTCTCTTTTACCTCTGTCGCTTTGTTTCCAGTACTATAAGCCGCATTATAGGTGATTACATATATGCCAAACTTATTAGTGTCTACTTTATCATCCCCAACAACAGGCTTTAACGTCTTATCACTATTATCAAATATATTAACACCTGGATCATTGAAAGGTTGACCATAAGTCAAAGTTATTTTACTATCACCTATTAAAGTAATTACTGGAGATTCCTTGTCTTTTTTACTCCACGCTGCTAAAAAATATAACAAGTCCAAAAATCGCTGCTACTATACCAATTTTTAGGTATTTCTTATTATAGGTTATAAAAACTCCCTTTTCATCTATATATTTTCAATTATGAATATATAGCAATTTTTTATATTTATACTTAAAATCCACGTTCTTATTATCGCCTAGTTTTAATCGCTAAATCCGCCTTAACAAATTTTTTCATTATAATTAAAATACATTTATTACTAGCAAGCT # Right flank : TACGAACTGTAAAACCCCTTGAATTTTCAATAATTCAAGGGGTTTTATCAATTAAAAAATACTTAACTGAGTTGCCTTTATAATCTTTTCTTGTGGTTTTTGTGATCCTACAAGAAACTTCATTTCTGAATACTGCTTTTCTGTAACTTGAAGAAATCTTACAGAGCCTCTAGGTGGTAAATTATTATTTAATCTAGCTATATGTTTATTTACTCCATCAATTCCATTACATATTCGTGAGTATACAGAAAACTGTATCATGTTATATCCATCATTAATTAAAAATCTTCTAAACTTTTGATATTCTTGTCTATCTCTTTTTTTAACTACTGGTAAATCAAAAAATACTATTAATCTCATAAACCTCCTACTCATAATAGTGATACTCCAAATCAATAATTTCTGGCAATTTTAAGACCCTAAAATCTTTTTTGCTGCATGCTGTTGTATATGATGATATAGTTTTATCTATAGCATTTAAAATTGAATGCTTTTGTCCA # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.59, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAATAAATTTTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 239433-237888 **** Predicted by CRISPRDetect 2.4 *** >NZ_LTBB01000003.1 Clostridium colicanis DSM 13634 CLCO_contig000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 239432 30 100.0 35 .............................. ATAAGATGCAGGATGTTAAAAAGGCTTTTGATGAT 239366 30 100.0 36 .............................. CAAATTTACATGAGGCCTTGCATGATATATTGGTGT 239300 30 100.0 36 .............................. CCATGCCTGTATCTGGTGCTGGACTGGCTACTATAC 239234 30 100.0 35 .............................. GGTAACCCTAATCATTATAAGCAATGGGCTTTAGA 239169 30 100.0 36 .............................. TTTTCCAGTTGACTTGTCTTGGTTGGGATATCATTT 239103 30 100.0 36 .............................. GTGTAGCCAACAAAAGCTTGAAGGTCTGAAATTTGC 239037 30 100.0 37 .............................. GTAAATCCTAGTGCAAATATTACAGCGGTAGGTAATT 238970 30 100.0 35 .............................. CGTAATACTTACACCGATAGACGGGCCCGCTATTC 238905 30 96.7 37 ......T....................... ATGTAACACTGAACATGATAGGGACAAAAATGCTAGT 238838 30 96.7 35 ......T....................... TGAACTTTACTATAGTCTATCCATGCTCTTACTAT 238773 30 96.7 35 ......T....................... TGGTTATACAGTAACCTTATGTCCGATAAGTCGGC 238708 30 96.7 35 ......T....................... TGGTTATACAGTAACCTTATGTCCGATAAGTCGGC 238643 30 96.7 36 ......T....................... ATATTATATAATTTAAAGCTTGAAGGTGATATCGAT 238577 30 100.0 36 .............................. ATTATTTATTGATCTAGCACCTATTTTTTATAATAC 238511 30 100.0 36 .............................. ATTATTTATTGATCTAGCACCTATTTTTTATAATAC 238445 30 100.0 36 .............................. TAATCTAAAACTCCTGGAGTATTAAGAAGTAAACTT 238379 30 100.0 36 .............................. TTCACTATCAGAACCAGGTGAAACTGTTATAGATGG 238313 30 100.0 36 .............................. AACTTCTTAATGGATTTGAAAAGACAGTTTACTGGA 238247 30 100.0 36 .............................. AAAGATTTATTCTCAATAGTAACTTTTTGTAGCCTT 238181 30 100.0 36 .............................. TTAACTTTAGCTTGCTGTATTTCAATCGTCTTTATC 238115 30 100.0 36 .............................. ATATATGGAACTGATTTTGTATGGAGAGAAATACAA 238049 30 100.0 36 .............................. CTATTATAGGCAAGTAATTAAGATATCTATAATTGA 237983 30 100.0 36 .............................. TTGTCATCATTTTCTATTGTGGTGCATAGAATATAT 237917 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 99.3 36 ATTGAACATTAACATAAGATGTATTTAAAT # Left flank : GCTTAAAGGAGAAAATGTAAATGAGTAAAAATTATAATTATAACTACGCATTTCTTTTTTATGATGTAGGTGAAAAAAGAGTAAATAAGGTGTTTAAGATATGTAAAAAGTATTTATCTCATTTTCAAAAGTCTGTGTTTAGAGGAGAATTAGCACCAGCAAACTGCATATTACTTAAGAAAGATTTAAAGAAGGTAATAGATGAAAATGAGGATTTTGTATGTATTATAAAGTTAATGAATAATAATGTCTATGGAGAAGAAGTATTAGGAAATAAGCAAAGCAATACAGGAGAAGACTTAATAATATAGGTTGATAAAGTTTTTACCAGGCTATTGAATTTATGAAGTATTATGAAATGTAGTAGATATAAGCATTTGATTAAATTTTATATAAGTAATTTAGTCATTATAAATTCACTTGGTAAAAATATTGTAAACTATTGAGTAAATCTATATTTTTGGTGTAAAATAAAAAACGAGAATGGCTTATTTGCAAAG # Right flank : TTCTTCTCTAGTTTTAAGAAGCTTGGTGTTAGTATATTAGTGTAGACACAAAAAGCCGAACACCTTAAAATATAAAAAGGGAAGGAAGTGTCTACAATGGCAAAAGGGCAAAAGTATTATACAGAAGAATTTAGAAAGACAATTGTAGAGCTCTATAACTCTGGTAAGAGTTTGGCAGAGCTTAGCAGCGAATATGGCATATCAAAATCAACAATCAATGGATGGATTAAGAAAGCTAAACCAATAACTGTGGATAAAGATACAACTATAACATCAGAAGAGTATCAGGCAATGTTAAAGAAGATGGCAAGGCTTGAGGAGGAAAATGAAATATTAAAAAAAGCCATGGCCATATTCGCAAAGAAGTAACCTCTATTTTTGAGTTTATAAATGATCATAAAGAAGAGCATGATATCACGCTAATGTGTGAAGTGTTAAAGGTTTCAAGAAGCTCTTTTTATAAGTATCTAAACAAAACCGAAAGCAAAAGAAGCGTAGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //