Array 1 1281618-1281450 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082206.1 Streptococcus dysgalactiae strain DY107 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1281617 36 100.0 30 .................................... CTGTCCACACACTTTGAACGATATTGCCCA 1281551 36 100.0 30 .................................... ATAACAAACCGTTTGAGCCGATCATCTACG 1281485 36 86.1 0 ............................TTT..CT. | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 95.4 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTATCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTATAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATATTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : AATATCGTCAATATGACTTGAGAGAGGGATAAAGACAATATCCTTATGCCTTTCTATTCTTTTTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCCGATGGAGTTAAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCATTATGAGGCTTTGGTTGCGAAGCCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGATCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGAACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAATGTGGTGCATGGGTCTGATTCAAGAGATTCTGCTA # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1639581-1638290 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082206.1 Streptococcus dysgalactiae strain DY107 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1639580 32 100.0 33 ................................ AGAAGCGAAGGGTGGTAACAGATGACTGAAGAG 1639515 32 100.0 35 ................................ TTTAAAAAGTTTAGCAACGTGCTCAATTCCCGCAA 1639448 32 100.0 35 ................................ AATCCCGTCAACAATGACACGACCAAACGATTGAT 1639381 32 100.0 33 ................................ AATTTCTTGCGGTTATGAATGCTATGGACTTTA 1639316 32 100.0 35 ................................ ATCCAACAAATTAAAACTAAAAAGTGACGATGTAT 1639249 32 100.0 34 ................................ TCCGTTAATGACATTGTTATTATTTTGGATAGTG 1639183 32 100.0 34 ................................ TGTAACAATCGCATCTACATCTTCCTCACCAATT 1639117 32 100.0 35 ................................ ATGATTAAATACCCAACAATATTATATCATGAATG 1639050 32 100.0 35 ................................ TAACTACGTGACTGCTACCTCAACAGGGAAGTTGT 1638983 32 100.0 35 ................................ ATGAAGTTCTTGTAAAATTTCCAAAGTCTCATCAT 1638916 32 100.0 34 ................................ AACGAACAACGAGGACGTTGGGTTAGAAAGGAGG 1638850 32 100.0 36 ................................ ACCATAAGTCTGATTTACTGAGACTGTTTTAGCTAA 1638782 32 100.0 33 ................................ TTTTATCCAGTCGGACAAACTCAATAAGATATT 1638717 32 100.0 35 ................................ TCCGTTTAAGTAATAACCTCTACGGATATAGTATC 1638650 32 100.0 34 ................................ ACTAAATTATAAAATTCCTCTTTGATGATTACTT 1638584 32 100.0 34 ................................ ACAGGAAGTATTAAAGCTTAGACATGTGGCTAAA 1638518 32 100.0 33 ................................ TTTTAGTTTTAAATCAACTTGTGGCGCCTCGAG 1638453 32 100.0 34 ................................ ATGAACTTGGACATATTGACCACGACTCAAATCA 1638387 32 100.0 34 ................................ CGTATATTGCAACGACGTCTTGACCAAAACCTGA 1638321 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.5 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAGCGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCTGCAGAATTTGTGGATATTAAGCACCGATTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATGAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATCTTCTCCCCTCTCTTTCCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGCTTGGCTGGCAATGGCGAGGTTGTGGCGGTGTCCAGTCGGTCGCTTGATAAGGCAAAGGCTTTTGCGACAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAAGCTCAGAAGGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //