Array 1 1-290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVEY01000023.1 Cellulomonas flavigena strain 493_CFLA 657_63996_2333611_256_,...,81_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================== ================== 1 34 100.0 30 .................................. CCACTAGATTCCACAAGTACTGGTTGGTCA 65 34 100.0 30 .................................. GACGCACGCGAAGGCGCAGCCGCCTCCCCA 129 34 97.1 30 .................A................ GACACGTCCGATGCCGCCGCGACCGCGACA 193 34 100.0 30 .................................. TGCACGTGGCCTCCCGGCGCATGTGAGACA 257 34 76.5 0 ..................CA...C.....TTGAT | ========== ====== ====== ====== ================================== ============================== ================== 5 34 94.7 30 GTATATCAAAGGGGATTGGTGATTGATTCCCAGC # Left flank : | # Right flank : TCAATTGTGAATGTGTTATGGATAAGGCAGATTGCAACTTGCCATTTTAGGGGGCTAGGTGTAGCCAGTTTGAATGGTCTGTATTTGCCGTAGGGAATTATTTTTTGTGCGGAGATGTGAGAAGTAACACAATAACGATTTCTTTTCCCTTGGAATGTTGGCGTCGATGGATGATCTGGCCCTCTCTTCTGGGAGAAGGTGCGCATCGCCTGTCCCCGTGAACGAAGCTCGCTTGCGCTACCCGGCCTGGTGTGTCTAAGCTGCTCGGCTTACTGATCGAACAACAAGGAGTGCGAAAGGTGATGAACAGTGAAGCCCGTGTGGCGATCCGCCCCCGGATCACCAAGGTTGGCAGCGCGTATCGGCGGGAGGTGAACTCGGGGACCTGTGAGCTGTGCTTCGCCGAATGGACGGCCACGATCCGCGACGTCAGCTTCAGGCTGGACGCCGCCGACGGCGACCGCTCGTGGGAGGCCACCGTTTCGACCTTCCACGAGGGC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATATCAAAGGGGATTGGTGATTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1256-624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVEY01000015.1 Cellulomonas flavigena strain 493_CFLA 649_1200_45601_157_,...,430+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1255 37 100.0 41 ..................................... AACGCAAGGCCGGTGGCCCCATCGACCGGCGGCGCGGTGAC 1177 37 100.0 38 ..................................... ACGCCAAATCTTGTGCTGAAAACACACGGCGTTGTTCT 1102 37 100.0 37 ..................................... AATGTGGACCCACCCCTCGTGAGAGACGAGTCGCATC 1028 37 94.6 35 .......................G.........T... TATCCGGGGACGATGCCGCCACCGGCGTACTCGGC 956 37 100.0 38 ..................................... GGAATTGGCGCTCGTAGCTGTACACTGCCTGGTCCAGG 881 37 97.3 37 .............G....................... TCGGAGAGGAGCTGGTATGTGCGCCCGACGCAGGCGC 807 37 91.9 36 ..........G....A..........C.......... GAACCCGTCACAGTTGAACAGCTTATGGTCGCTGTA 734 37 94.6 37 ...............................C....T CCAGACAGTGCGTTCGCTGCGGTCGACGGCTTGTGCC 660 37 86.5 0 ...G......G...........G.....T....G... | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 96.1 38 GTCAGAAAGCACCTAGCGCCATAAGGTGCATTAAGAC # Left flank : | # Right flank : GGATGGTTGTTGGTTTGGGTCCAGCCGCAGGAGCGCGAACTCTTCGGCTAAGACGCGCCCCGCATCAACAAACCGCCGACAACTCGCGCACAGGCCAGTAGTGAAACCCGGGCCGCCCCTGTCTGCGGTGTTGGATGGGCTAGTGAAACCCAGGCCGCCCCTGCTTCGCGTGAATCGCCGGATATTGGTGTTTTTCTTCAGGCGGGGGTGGTCTGGGTTTCACGCGACGCCAGAGAAGGGGTGGCGGGGGTGGTTTGGGTTTCACGCAGGGCCAGACAACGGGTGGCGGGGGTGGTCTGGGTTTCACGCGACGCCAGAGAAGGGGTGGCGGGGGTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTTCACGCGACGCCAGAGAAGGGGTGGCGGGGGTGGTCTGGGTTTCATACAGCGCCGGA # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCTAGCGCCATAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.80,-8.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1-260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVEY01000041.1 Cellulomonas flavigena strain 493_CFLA 679_125026_4548425_559_,...,427+, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1 37 100.0 38 ..................................... ACTCGATGCGCGCCGTCCCCGGCGTGTGGATCGATGGG 76 37 100.0 36 ..................................... TTGCGCTCCTCGCCACGCGAGGAGACGGTCCGCAGA 149 37 100.0 38 ..................................... CCAGGGGTTTGTGCCGCCTGGGTGCGGGGCGGGCTCTC 224 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 100.0 41 GTCTTAATGCACCTTATGGCGCTAGGTGCTTTCTGAC # Left flank : | # Right flank : CGGCCCGGCGTGTCGCACCCACTGTGACCAGCAGAAACGCCACCCCGGATCGCCAGGGGCCGAGAAAGCACCCACCCGACCCGCAAGCACACGGCCAGAATAGCAGGGTTTTCGTTGCAAATCCTCACATCGCCACGGACGCCCCAAGAAGCCGAACTCGCCCCGGAAAAGCCGATCGACATCGGCGCGTCGCGGCTAGCAACTGTGCGCTACACAACGCACTGACCGCCGCACAGCGCGCTCACCGCTTCAACAGCGCCGCGAAGCCGCATCCCCAGGCCCTCCCCCGTTGCCGCAGACCCGGGCGTCACCGCGCAACCAGGCGCAGGCCTCGCCGCGCCACCGCCACCGCGACGCGACACCGACAGCCCCCTGTGGGTCGATAGTCCGCCCACTGCCCACCGACAGACGACAGACGGCAGACGGTCGAAGACAGCCGACGGCGGGTCACGCGGCCGCGCTGCCGCTGTCGTCTCCAAGCAATGGGGAGCCTACCGACA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATGCACCTTATGGCGCTAGGTGCTTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.80,-8.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 193576-193910 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVEY01000008.1 Cellulomonas flavigena strain 493_CFLA 639_208545_6253420_85+,...,427+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================================================================== ================== 193576 32 78.1 28 .GT..............C....TG....TC.. AGGCGAAGTAGTACCAGGTGCGCCCAAT 193636 32 100.0 28 ................................ GTCCGAGGTAGTACCAGGTGGCTCCGAG 193696 32 100.0 28 ................................ AGGACAGGAGGTACCAGCGCCCATCGAC 193756 32 71.9 91 ....AC..........TT....AT...C.TC. CTGGATCGATGTAGTACCAGCTTCCGCCGCTCATGAGCCATCCGGACACGCGGGCACCGTACGCGTTGTAGTAGCTCCAGGCGCCATCCTG 193879 32 65.6 0 G.TA.C......C....C...CAT....TT.. | ========== ====== ====== ====== ================================ =========================================================================================== ================== 5 32 83.1 44 CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG # Left flank : GGGCGCAGGTTGACGTAGTGGTCGAGCGCGAAGCGCAGCTTGAGGAGTAGCCCTCGCTCGAGGACGCCGGAGGGGACGGAGGGGTCTCCGACCGCTCCCAGGAGGATGGCGTCGTGGCCCTTGATGGCCTGAAGATCGTCGTCCGTGAGCGTGTCGCCGGTGGCATGCCAGCGCCGCGCCCCCAGATCGAAGTGGGTCGTGGAGTAGGCGATGGCGCGGTCGGCCAGAACTCGGTCGAGGACTTTCAGGCCCTCGGGTACGATCTCCTGGCCGATCCCATCCCCGGGGATTACTGCGATTTTCAGTGTCATGCTTCCATCTTCCCCGCTGACGCTTCCCTCGGCCCGCCCGGTCCGACCCGTGGGCTGTTTCATTGGTTACGCCGTTTCAACGAGGCGGGGTCGCCGGAACATTCGCGCGTTCCGGCGACCCCGCGATCGGTATCGGGTTGATCAGATCCACGCGCCCGAGGGAGCGAAGAGGTACCAGCGCCCGTCAAT # Right flank : GCGTCGAAGCGGTAGGTGGCCTCGCCAATGGTGAGGGTTCGAGAGGTGGCGAACGTGGAGTCTTCGAGTTGCCACTTCCACCCGTTGCCGGTGTTGACCCAGTGGGCAGGTTCCGTCGCGGGGGCGGGATCCGGACTCGGCTGCGGCGTGGGGGCGGGTCCCTCGCCGGGATCGGTGAGGCCGAGGTAGGAGGCGTCCATCCTCATGAACTCGATGTTCTTGTAGCCGCCGGACTCATACAGCAGGCCCCATGTTCCGTCGGCGAGGGGGTGCAGCGTCGAGTACGCCATCTCGCCGCTCTCGAAGACCTTACCGTCACTCCAGGTGAAGCCGTCGTCGTAGGAGACGCGCACCGTGCCGTTGGCGCGGGCGCTGGCGGAGTCAGCGTTTGAGAAGAGGAGCACGCGGGCGCGAGCCGAGCCCTCGGGGGCATCCGGGTAGGCGCGCACGATCGACGCGTTGTTGCGCGGATCGGTCAGATCCCAGTTGTGCCGGAAGGG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.15, 5:0, 6:0.25, 7:-1.42, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //