Array 1 8316-14203 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNMC01000436.1 Xanthomonas oryzae pv. oryzae strain JP04 scaffold435, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8316 31 100.0 37 ............................... CTGGTTGGCCAGTGCGTTGCTGGTGCTGACCGGGCTA 8384 31 100.0 35 ............................... CTGGGCCTCTTTTATCTTCTGGAAGCGATTGGTGT 8450 31 100.0 36 ............................... ATATCAGAATAACCCCGGCGTTATAAATGGTGTGAA 8517 31 100.0 36 ............................... TGTTGCTGTGGGAGAGACCGCATGAGCGAGAAAACC 8584 31 100.0 35 ............................... CGCCGACAGATTGCCAACAGTGGCAAACAGCTCGT 8650 31 100.0 33 ............................... CTTACAGACGACCAGTATGACAGCTTTGCCAAG 8714 31 100.0 35 ............................... CAGCTCTTGCCCGAGAGTTCGAACACCAGCTGAAC 8780 31 100.0 37 ............................... ACTGGCGACTCAAGCACTTGCAGGAGAGCATGCGCCC 8848 31 100.0 34 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATGT 8913 31 100.0 34 ............................... CTTGACCTTCAAACCACGGATCAGGCGGTTGTTC 8978 31 100.0 34 ............................... AAGCCAGCCGCCGACAGTGTAAGGGCAGACCCAC 9043 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 9108 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 9173 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 9237 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 9303 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 9368 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 9435 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 9500 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 9568 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 9634 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 9700 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 9764 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 9829 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 9896 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 9962 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 10028 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 10096 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 10162 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 10227 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 10292 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 10358 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 10424 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 10489 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 10555 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 10621 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 10686 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 10752 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 10818 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 10885 31 100.0 35 ............................... AACTGAAAATTAACTCTATCTAACCAAAAGGAACC 10951 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 11016 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 11082 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 11149 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 11216 31 100.0 33 ............................... GTACAGGTCGGGCTGTTGCGCTCTGTAGTACGC 11280 31 100.0 33 ............................... CAGCCCCGGCGTCGGCGGCCGCGTCGAACTCCT 11344 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 11409 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 11475 31 100.0 34 ............................... TCAGCCTCTAGCCTCTCAGCAAGGGACTTAGAGC 11540 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 11607 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 11673 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 11740 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 11806 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 11870 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 11935 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 12000 31 100.0 36 ............................... CGCCGCGTTCGCGCCGCAGACCGTAAGCAGTTGGCG 12067 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 12133 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 12199 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 12266 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 12330 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 12396 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 12461 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 12527 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 12592 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 12659 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 12724 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 12791 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 12857 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 12924 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 12990 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 13057 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 13125 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 13190 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 13255 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 13320 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 13385 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 13451 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 13517 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 13582 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 13647 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 13713 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 13779 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 13843 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 13910 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 13976 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 14041 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 14108 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 14173 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 90 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGAGCAGATGTCTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //